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See other ECM1 GE Assays ›
Gene Symbol:
Ecm1
Gene Name:
extracellular matrix protein 1
Gene Aliases:
-
Chromosome Location:
Chr.2: 197855468 - 197860970 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01534170_g1
Best Coverage
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Availability Inventoried
Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Ecm1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_053882.1 NP_446334.1 10 - 11 1564 74
XM_006232942.2 XP_006233004.1 10 - 11 1896 74
GenBank mRNA BC085879.1 - 10 - 11 1564 7191762 74

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200004216.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ecm1

Gene Ontology Categories:

Function(s) Process(es)

ossification
angiogenesis
positive regulation of endothelial cell proliferation
negative regulation of cytokine-mediated signaling pathway
regulation of type 2 immune response
regulation of transcription from RNA polymerase II promoter
inflammatory response
signal transduction
biological_process
negative regulation of peptidase activity
negative regulation of bone mineralization
biomineral tissue development
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of angiogenesis
regulation of T cell migration
protease binding
molecular_function
signal transducer activity
interleukin-2 receptor binding
protein C-terminus binding
enzyme binding
laminin binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P1050480 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 183376 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 66866 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 770337 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 27951 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P1050480 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P1050480 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P1050480 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P342051 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P1050480 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 72024 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10825032 - -
Affymetrix Rat Gene 1.0 ST Array 10825031 - -
Affymetrix Rat Gene 1.0 ST Array 10825035 - -
Affymetrix Rat Gene 1.0 ST Array 10825029 - -
Affymetrix Rat Gene 1.0 ST Array 10825030 - -
Affymetrix Rat Gene 1.0 ST Array 10825033 - -
Affymetrix Rat Gene 1.0 ST Array 10825025 - -
Affymetrix Rat Gene 1.0 ST Array 10825027 - -
Affymetrix Rat Gene 1.0 ST Array 10825023 - -
Affymetrix Rat Gene 1.0 ST Array 10825028 - -
Affymetrix Rat Gene 1.0 ST Array 10825026 - -
Affymetrix Rat Gene 1.0 ST Array 10825034 - -
Affymetrix Rat Gene 1.0 ST Array 10825024 - -
Affymetrix Rat Gene 1.1 ST Array 10825022 - -
Rat Genome 230 2.0 Array 1388698_PM_at - -
Rat Genome 230 2.0 Array 1388698_at - -
Affymetrix HT Rat Focus Array 1388698_PM_at - -
Affymetrix HT Rat Focus Array 1388698_at - -
Affymetrix Rat Clariom S Assay PSR0200028891.rn.1 TC0200004216.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0200028890.rn.1 TC0200004216.rn.1 RTA TC
Rat Expression Set 230 1388698_at - -
Rat Expression Set 230 1388698_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10825022 - -
Rat Genome U34 Set rc_AI237589_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21576361 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1362266 - -
RatRef-12 Expression BeadChip ILMN_49561 - -

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