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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89748708 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00044804_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 35 - Exon 35
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss SPIRE2 FANCA LOC107984817 LOC105371419 TCF25 ZNF276
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA VPS9D1-AS1 VPS9D1 CDK10 SPATA2L ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPIRE2 FANCA DBNDD1 VPS9D1 SPATA33 CHMP1A TUBB3 LOC105371419 TCF25 MC1R AFG3L1P DPEP1 VPS9D1-AS1 CDK10 DEF8 SPATA2L GAS8-AS1 GAS8 LOC107984817 CENPBD1 ZNF276
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPIRE2 FANCA VPS9D1-AS1 VPS9D1 CDK10 SPATA33 SPATA2L LOC107984817 LOC105371419 ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SPIRE2 ZNF778 SPATA33 TUBB3 FAM157C ANKRD11 DPEP1 SNORD68 LOC101927817 CDK10 GAS8-AS1 GAS8 LOC107984817 CENPBD1 URAHP PRDM7 FANCA SPG7 DBNDD1 VPS9D1 CHMP1A LOC105371419 TUBB8P7 TCF25 MC1R AFG3L1P RPL13 VPS9D1-AS1 LOC100287036 DEF8 LOC105371414 SPATA2L CPNE7 ZNF276
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss SPIRE2 FANCA LOC107984817 LOC105371419 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss PIEZO1 LOC107987238 LOC339059 ZNF778 SPATA33 TRAPPC2L TUBB3 CYBA IL17C LOC100289580 DPEP1 SNORD68 LOC101927817 CDK10 GAS8-AS1 GAS8 LINC00304 LOC107984817 CDH15 CENPBD1 URAHP RNF166 MVD VPS9D1 CHMP1A PABPN1L LOC105371419 ACSF3 MC1R AFG3L1P LOC400558 VPS9D1-AS1 GALNS APRT CPNE7 ZNF276 SPIRE2 SLC22A31 FAM157C LOC101927793 CTU2 ANKRD11 SNAI3-AS1 MIR4722 PRDM7 FANCA SPG7 DBNDD1 TUBB8P7 TCF25 LOC105371409 CBFA2T3 RPL13 LOC100287036 LOC100129697 DEF8 LOC105371414 CDT1 SPATA2L SNAI3
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion FANCA SPG7 VPS9D1 SPATA33 CHMP1A DPEP1 SNORD68 RPL13 VPS9D1-AS1 CDK10 SPATA2L CPNE7 ZNF276

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