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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738256 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00072147_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 4755 NP_000126.2
NM_001286167.1 43 4759 NP_001273096.1
X99226.1 43 4744 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 1952 NP_001106997.1
NM_152287.3 11 1942 NP_689500.2
NR_110122.1 11 2027
NR_110126.1 11 1910
NR_110128.1 11 1833
NR_110129.1 11 1922
XM_005256324.3 11 1901 XP_005256381.1
XM_005256328.3 9 1582 XP_005256385.1
XM_017023890.1 10 1877 XP_016879379.1
AK026482.1 11 1892
AK056405.1 11 1978
AK096762.1 4 2531
AK289801.1
AK295770.1 9 1614
AK315793.1
BC032781.1 10 1611 AAH32781.2
BC107603.1 11 1767 AAI07604.1
BC110348.1 11 1667 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion ZNF276 VPS9D1 FANCA CDK10 VPS9D1-AS1 SPATA2L
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA33 ZNF276 VPS9D1 LOC107984817 FANCA CDK10 VPS9D1-AS1 LOC105371419 SPIRE2 SPATA2L
dgv872e212 Chr.16:89731232 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss ZNF276 VPS9D1 FANCA CDK10 VPS9D1-AS1 SPATA2L
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SPATA33 LOC107987238 PIEZO1 TUBB3 DEF8 URAHP LOC101927793 CBFA2T3 MVD LOC105371414 SNORD68 LOC105371419 SPATA2L LINC00304 TUBB8P7 LOC101927817 SPG7 CDK10 LOC339059 RNF166 CENPBD1 LOC100129697 LOC100287036 SPIRE2 APRT LOC105371409 MC1R GALNS DBNDD1 VPS9D1-AS1 MIR4722 LOC100289580 RPL13 LOC400558 ZNF276 AFG3L1P SLC22A31 VPS9D1 CPNE7 ACSF3 PRDM7 SNAI3 FAM157C CDT1 DPEP1 LOC107984817 CYBA GAS8 ZNF778 IL17C SNAI3-AS1 CHMP1A ANKRD11 CDH15 GAS8-AS1 PABPN1L TRAPPC2L CTU2 FANCA TCF25
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion RPL13 SPATA33 ZNF276 CHMP1A VPS9D1 SPG7 CDK10 CPNE7 DPEP1 FANCA SNORD68 VPS9D1-AS1 SPATA2L
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 VPS9D1 FANCA VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA33 ZNF276 AFG3L1P CHMP1A VPS9D1 CDK10 GAS8-AS1 CENPBD1 TUBB3 DEF8 SPIRE2 MC1R DPEP1 LOC107984817 FANCA GAS8 TCF25 DBNDD1 VPS9D1-AS1 LOC105371419 SPATA2L
dgv873e212 Chr.16:89734780 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss RPL13 SPATA33 ZNF276 AFG3L1P VPS9D1 CPNE7 PRDM7 TUBB3 DEF8 URAHP FAM157C DPEP1 LOC107984817 LOC105371414 SNORD68 GAS8 ZNF778 LOC105371419 SPATA2L CHMP1A TUBB8P7 LOC101927817 ANKRD11 SPG7 CDK10 GAS8-AS1 CENPBD1 LOC100287036 SPIRE2 MC1R FANCA TCF25 DBNDD1 VPS9D1-AS1
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 LOC107984817 FANCA LOC105371419 SPIRE2
dgv874e212 Chr.16:89737043 - 89738373 on Build GRCh38 Loss ZNF276 FANCA
esv3572253 Chr.16:89737225 - 89738373 on Build GRCh38 Gain ZNF276 FANCA

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