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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89738256 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00072147_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Within Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 43 4755 NP_000126.2
NM_001286167.1 43 4759 NP_001273096.1
X99226.1 43 4744 CAA67610.1

Target Gene Details

Entrez Gene ID:

 92822

Gene Name:

 zinc finger protein 276

Gene Aliases:

 CENP-Z, CENPZ, ZADT, ZFP276, ZNF477

Location:

 Chr.16:89720368-89740925 on Build GRCh38

Assay Gene Location:

 Within Exon 14
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ZNF276 NM_001113525.1 11 1952 NP_001106997.1
NM_152287.3 11 1942 NP_689500.2
NR_110122.1 11 2027
NR_110126.1 11 1910
NR_110128.1 11 1833
NR_110129.1 11 1922
XM_005256324.3 11 1901 XP_005256381.1
XM_005256328.3 9 1582 XP_005256385.1
XM_017023890.1 10 1877 XP_016879379.1
AK026482.1 11 1892
AK056405.1 11 1978
AK096762.1 4 2531
AK289801.1
AK295770.1 9 1614
AK315793.1
BC032781.1 10 1611 AAH32781.2
BC107603.1 11 1767 AAI07604.1
BC110348.1 11 1667 AAI10349.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion CDK10 FANCA VPS9D1 ZNF276 VPS9D1-AS1 SPATA2L
dgv872e212 Chr.16:89731232 - 89738373 on Build GRCh38 Loss FANCA ZNF276
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain CDK10 FANCA LOC107984817 SPATA33 LOC105371419 VPS9D1 SPIRE2 ZNF276 VPS9D1-AS1 SPATA2L
nsv833330 Chr.16:89678466 - 89741783 on Build GRCh38 Loss CDK10 FANCA VPS9D1 ZNF276 VPS9D1-AS1 SPATA2L
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC400558 TRAPPC2L DEF8 ANKRD11 LOC100287036 ACSF3 LOC105371409 SPIRE2 CYBA APRT LOC105371414 DBNDD1 PRDM7 SNORD68 SLC22A31 CDK10 RNF166 TCF25 TUBB8P7 URAHP SPG7 SPATA2L LOC107984817 SNAI3 CDH15 VPS9D1 PIEZO1 LOC100129697 VPS9D1-AS1 MC1R FANCA GALNS CENPBD1 LOC100289580 CDT1 GAS8-AS1 SPATA33 MIR4722 GAS8 TUBB3 LOC339059 ZNF778 LOC107987238 PABPN1L ZNF276 CBFA2T3 FAM157C IL17C CTU2 CPNE7 CHMP1A MVD LOC101927817 DPEP1 SNAI3-AS1 AFG3L1P RPL13 LOC105371419 LOC101927793 LINC00304
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion CPNE7 CHMP1A SPATA33 VPS9D1 DPEP1 VPS9D1-AS1 SNORD68 CDK10 FANCA RPL13 SPG7 ZNF276 SPATA2L
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1 ZNF276 VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss CHMP1A LOC107984817 SPATA33 DEF8 VPS9D1 GAS8 SPIRE2 TUBB3 DPEP1 VPS9D1-AS1 DBNDD1 MC1R AFG3L1P CDK10 FANCA TCF25 LOC105371419 CENPBD1 ZNF276 GAS8-AS1 SPATA2L
dgv873e212 Chr.16:89734780 - 89738373 on Build GRCh38 Loss FANCA ZNF276
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SPATA33 DEF8 ANKRD11 GAS8 LOC100287036 SPIRE2 TUBB3 LOC105371414 ZNF778 DBNDD1 PRDM7 SNORD68 CDK10 TCF25 TUBB8P7 URAHP SPG7 ZNF276 SPATA2L FAM157C CPNE7 CHMP1A LOC107984817 VPS9D1 LOC101927817 DPEP1 VPS9D1-AS1 MC1R AFG3L1P FANCA RPL13 LOC105371419 CENPBD1 GAS8-AS1
dgv875e212 Chr.16:89737043 - 89738817 on Build GRCh38 Loss FANCA ZNF276
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA LOC107984817 LOC105371419 SPIRE2 ZNF276
esv3572253 Chr.16:89737225 - 89738373 on Build GRCh38 Gain FANCA ZNF276

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