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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89746617 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00085736_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 37 - Exon 37
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion ZNF276 VPS9D1 FANCA VPS9D1-AS1
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss ZNF276 SPIRE2 FANCA LOC105371419 TCF25 LOC107984817
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion ZNF276 SPATA2L VPS9D1 CDK10 FANCA VPS9D1-AS1
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss GAS8-AS1 SPATA33 DPEP1 TUBB3 SPATA2L VPS9D1 SPIRE2 AFG3L1P GAS8 CDK10 FANCA DBNDD1 DEF8 ZNF276 MC1R CENPBD1 CHMP1A LOC105371419 VPS9D1-AS1 TCF25 LOC107984817
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA33 ZNF276 SPATA2L VPS9D1 SPIRE2 CDK10 FANCA LOC105371419 VPS9D1-AS1 LOC107984817
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss SPATA33 VPS9D1 SPIRE2 TUBB8P7 CDK10 FANCA DBNDD1 URAHP SNORD68 ANKRD11 ZNF276 RPL13 LOC101927817 CENPBD1 LOC105371419 LOC107984817 GAS8-AS1 DPEP1 TUBB3 SPATA2L FAM157C AFG3L1P GAS8 DEF8 ZNF778 LOC105371414 LOC100287036 SPG7 CPNE7 MC1R CHMP1A VPS9D1-AS1 PRDM7 TCF25
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss ZNF276 SPIRE2 FANCA LOC105371419 LOC107984817
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss SPATA33 CYBA VPS9D1 FANCA DBNDD1 CBFA2T3 TRAPPC2L ANKRD11 ZNF276 RPL13 CENPBD1 LINC00304 DPEP1 PIEZO1 LOC339059 SPATA2L FAM157C GALNS AFG3L1P GAS8 DEF8 ZNF778 LOC105371414 LOC100287036 CDT1 APRT LOC107987238 PRDM7 LOC400558 CDH15 MVD CTU2 SPIRE2 LOC100129697 SNAI3 TUBB8P7 CDK10 URAHP SNORD68 SLC22A31 LOC105371409 IL17C LOC101927817 LOC105371419 RNF166 ACSF3 LOC107984817 GAS8-AS1 MIR4722 TUBB3 LOC100289580 SNAI3-AS1 PABPN1L SPG7 CPNE7 MC1R CHMP1A VPS9D1-AS1 LOC101927793 TCF25
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA33 DPEP1 SPATA2L VPS9D1 CDK10 FANCA SNORD68 SPG7 CPNE7 ZNF276 RPL13 CHMP1A VPS9D1-AS1

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