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Gene Symbol
TNXB
Assay Reference Genome
Location

Chr.6:32046261 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00088637_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 7148

Gene Name:

 tenascin XB

Gene Aliases:

 EDS3, HXBL, TENX, TN-X, TNX, TNXB1, TNXB2, TNXBS, VUR8, XB, XBS

Location:

 Chr.6:32041155-32109374 on Build GRCh38

Assay Gene Location:

 Within Exon 31
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNXB NM_019105.6 31 10716 NP_061978.6
AB209012.1 2 442 BAD92249.1
BC033740.1 2 293 AAH33740.1
BC071883.1 1 347 AAH71883.1
M25813.1 2 248 AAA35884.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv602045 Chr.6:31996469 - 32046679 on Build GRCh38 Gain C4B CYP21A2 CYP21A1P TNXB C4A TNXA
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion SNORA38 MSH5 SKIV2L MIR3135B MIR4646 EHMT2 FKBPL HCG26 PSMB8-AS1 DDAH2 MSH5-SAPCD1 PBX2 SAPCD1-AS1 DXO RGL2 ZBTB9 MICB CUTA CSNK2B LTB WDR46 CYP21A1P ABHD16A NFKBIL1 PPT2-EGFL8 SLC44A4 CLIC1 B3GALT4 C4A GPSM3 DDX39B-AS1 HSPA1L PHF1 AGPAT1 C2-AS1 HLA-DQB2 C6orf10 LOC101929163 RNF5 NOTCH4 HLA-DPB2 PRRC2A HSPA1A DDX39B ZBTB12 HLA-DQB1 RPS18 HLA-DQA2 ATP6V1G2 HLA-DQB1-AS1 MIR6833 VARS SLC39A7 SNORD117 SYNGAP1 PPP1R2P1 CFB EGFL8 MIR5004 MIR6721 C6orf48 BTNL2 MCCD1 PSMB9 LY6G5B LY6G5C TNXB LY6G6E PRRT1 LSM2 HLA-DPA1 LY6G6D MIR6832 TNXA LOC102725068 TAPBP PPT2 HLA-DRA APOM BRD2 SAPCD1 MIR6873 HSPA1B RXRB HSD17B8 NELFE LST1 NEU1 HCP5 ATP6V1G2-DDX39B HLA-DPB1 NCR3 LOC100294145 KIFC1 HLA-DRB1 LOC100507547 TNF MIR219A1 STK19 SNORD52 AIF1 ZBTB22 COL11A2 SNORD48 C6orf25 MIR6834 GPANK1 C4B DAXX LOC100287329 ATF6B LTA HLA-DOA LY6G6C HLA-DMA HLA-DRB6 LY6G6F HLA-DRB5 PFDN6 C6orf47 HCG23 AGER HLA-DMB HCG25 HCG24 TAP2 MIR1236 RING1 VWA7 HLA-DOB TAP1 CYP21A2 C2 BAG6 HLA-DQA1 SNORD84 VPS52 PSMB8
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss EGFL8 SNORA38 MSH5 SKIV2L MIR6721 C6orf48 BTNL2 MCCD1 MIR4646 EHMT2 LY6G5B FKBPL LY6G5C HCG26 TNXB DDAH2 MSH5-SAPCD1 LY6G6E PBX2 SAPCD1-AS1 PRRT1 LSM2 DXO MICB LY6G6D MIR6832 TNXA LOC102725068 PPT2 HLA-DRA CSNK2B LTB APOM HLA-B SAPCD1 HSPA1B NELFE LST1 CYP21A1P NEU1 HCP5 ATP6V1G2-DDX39B NCR3 ABHD16A NFKBIL1 LOC100507547 PPT2-EGFL8 SLC44A4 TNF CLIC1 STK19 SNORD52 AIF1 C4A GPSM3 DDX39B-AS1 HSPA1L SNORD48 AGPAT1 C2-AS1 C6orf25 GPANK1 C4B C6orf10 LOC100287329 LOC101929163 ATF6B LTA LY6G6C RNF5 NOTCH4 LY6G6F PRRC2A C6orf47 HCG23 HSPA1A AGER DDX39B MICA ZBTB12 MIR1236 ATP6V1G2 VWA7 MIR6891 MIR6833 VARS CYP21A2 SNORD117 C2 BAG6 SNORD84 CFB
nsv5247 Chr.6:31957962 - 32055439 on Build GRCh38 Deletion C4B CYP21A2 CYP21A1P SKIV2L DXO STK19 TNXB NELFE C4A TNXA
nsv285 Chr.6:32009269 - 32055439 on Build GRCh38 Deletion C4B CYP21A2 TNXB TNXA
nsv5248 Chr.6:32028238 - 32051635 on Build GRCh38 Insertion C4B CYP21A2 TNXB
esv28110 Chr.6:31980130 - 32048749 on Build GRCh38 Gain+Loss C4B CYP21A2 CYP21A1P STK19 TNXB C4A TNXA
dgv10463n54 Chr.6:31817661 - 32683279 on Build GRCh38 Loss EGFL8 SKIV2L MIR6721 C6orf48 BTNL2 EHMT2 FKBPL TNXB PBX2 PRRT1 DXO TNXA PPT2 HLA-DRA HSPA1B NELFE CYP21A1P NEU1 HLA-DRB1 LOC100507547 PPT2-EGFL8 SLC44A4 STK19 SNORD52 C4A GPSM3 SNORD48 AGPAT1 C2-AS1 C4B C6orf10 LOC101929163 ATF6B RNF5 HLA-DRB6 NOTCH4 HLA-DRB5 HCG23 HSPA1A AGER ZBTB12 MIR1236 HLA-DQB1 HLA-DQB1-AS1 MIR6833 CYP21A2 C2 HLA-DQA1 CFB
nsv601971 Chr.6:31971488 - 32046679 on Build GRCh38 Gain C4B CYP21A2 CYP21A1P DXO STK19 TNXB C4A TNXA
dgv10472n54 Chr.6:31985690 - 32812026 on Build GRCh38 Loss EGFL8 MIR3135B MIR6721 BTNL2 AGPAT1 FKBPL HLA-DQB2 TNXB C4B C6orf10 PBX2 LOC101929163 ATF6B PRRT1 RNF5 HLA-DRB6 NOTCH4 HLA-DRB5 TNXA PPT2 HLA-DRA HCG23 AGER HLA-DQB1 HLA-DQA2 HLA-DQB1-AS1 MIR6833 CYP21A2 CYP21A1P HLA-DRB1 LOC100507547 PPT2-EGFL8 HLA-DQA1 C4A GPSM3
nsv428141 Chr.6:31903735 - 32125066 on Build GRCh38 Gain+Loss SKIV2L MIR1236 C2-AS1 TNXB NELFE C4B CYP21A2 CYP21A1P ATF6B C2 DXO STK19 CFB C4A TNXA
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion EGFL8 SNORA38 MSH5 SKIV2L MIR6721 C6orf48 BTNL2 MCCD1 MIR4646 EHMT2 LY6G5B FKBPL LY6G5C HCG26 TNXB DDAH2 MSH5-SAPCD1 LY6G6E PBX2 SAPCD1-AS1 PRRT1 LSM2 DXO MICB LY6G6D MIR6832 TNXA LOC102725068 PPT2 HLA-DRA CSNK2B LTB APOM SAPCD1 HSPA1B NELFE LST1 CYP21A1P NEU1 HCP5 ATP6V1G2-DDX39B NCR3 ABHD16A NFKBIL1 HLA-DRB1 LOC100507547 PPT2-EGFL8 SLC44A4 TNF CLIC1 STK19 SNORD52 AIF1 C4A GPSM3 DDX39B-AS1 HSPA1L SNORD48 AGPAT1 C2-AS1 C6orf25 GPANK1 C4B C6orf10 LOC100287329 LOC101929163 ATF6B LTA LY6G6C RNF5 HLA-DRB6 NOTCH4 LY6G6F HLA-DRB5 PRRC2A C6orf47 HCG23 HSPA1A AGER DDX39B ZBTB12 MIR1236 ATP6V1G2 VWA7 MIR6833 VARS CYP21A2 SNORD117 C2 BAG6 SNORD84 CFB
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SNORA38 MSH5 SKIV2L C6orf48 MCCD1 MIR4646 EHMT2 LY6G5B LY6G5C HCG26 TNXB DDAH2 MSH5-SAPCD1 LY6G6E SAPCD1-AS1 LSM2 DXO MICB LY6G6D MIR6832 TNXA LOC102725068 CSNK2B LTB APOM HLA-B SAPCD1 HSPA1B NELFE LST1 CYP21A1P NEU1 HCP5 ATP6V1G2-DDX39B NCR3 ABHD16A NFKBIL1 SLC44A4 TNF CLIC1 STK19 SNORD52 AIF1 C4A DDX39B-AS1 HSPA1L SNORD48 C2-AS1 C6orf25 GPANK1 C4B LOC100287329 LTA LY6G6C LY6G6F PRRC2A C6orf47 HSPA1A DDX39B MICA ZBTB12 MIR1236 ATP6V1G2 VWA7 MIR6891 VARS CYP21A2 SNORD117 C2 BAG6 SNORD84 CFB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion SNORA38 MSH5 SKIV2L MIR3135B MIR4646 EHMT2 FKBPL HCG26 PSMB8-AS1 DDAH2 MSH5-SAPCD1 PBX2 SAPCD1-AS1 DXO RGL2 ZBTB9 MICB CUTA CSNK2B LTB WDR46 CYP21A1P ABHD16A NFKBIL1 PPT2-EGFL8 SLC44A4 CLIC1 B3GALT4 C4A GPSM3 DDX39B-AS1 HSPA1L PHF1 AGPAT1 C2-AS1 HLA-DQB2 C6orf10 LOC101929163 RNF5 NOTCH4 HLA-DPB2 PRRC2A HSPA1A DDX39B ZBTB12 HLA-DQB1 RPS18 HLA-DQA2 ATP6V1G2 HLA-DQB1-AS1 MIR6833 VARS SLC39A7 SNORD117 SYNGAP1 PPP1R2P1 CFB EGFL8 MIR5004 MIR6721 C6orf48 BTNL2 MCCD1 PSMB9 LY6G5B LY6G5C TNXB LY6G6E PRRT1 LSM2 HLA-DPA1 LY6G6D MIR6832 TNXA LOC102725068 TAPBP PPT2 HLA-DRA APOM BRD2 SAPCD1 MIR6873 HSPA1B RXRB HSD17B8 NELFE LST1 NEU1 HCP5 ATP6V1G2-DDX39B HLA-DPB1 NCR3 LOC100294145 KIFC1 HLA-DRB1 LOC100507547 TNF MIR219A1 STK19 SNORD52 AIF1 ZBTB22 COL11A2 SNORD48 C6orf25 MIR6834 GPANK1 C4B DAXX LOC100287329 ATF6B LTA HLA-DOA LY6G6C HLA-DMA HLA-DRB6 LY6G6F HLA-DRB5 PFDN6 C6orf47 HCG23 AGER HLA-DMB HCG25 HCG24 TAP2 MIR1236 RING1 VWA7 HLA-DOB TAP1 CYP21A2 C2 BAG6 HLA-DQA1 SNORD84 VPS52 PSMB8
nsv981129 Chr.6:31980992 - 32057861 on Build GRCh38 Duplication C4B CYP21A2 CYP21A1P STK19 TNXB C4A TNXA
nsv10824 Chr.6:31980357 - 32046247 on Build GRCh38 Gain+Loss C4B CYP21A2 CYP21A1P STK19 TNXB C4A TNXA

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More Information


Additional Information:

For this assay, SNP(s) [rs115065067] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

extracellular matrix protein

Gene Ontology Categories:

Function(s) Process(es)


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