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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89745082 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00112477_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 37 - Exon 38
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion VPS9D1 ZNF276 VPS9D1-AS1 FANCA
nsv457624 Chr.16:89738447 - 89915950 on Build GRCh38 Loss LOC105371419 SPIRE2 ZNF276 TCF25 LOC107984817 FANCA
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion VPS9D1 SPATA2L ZNF276 CDK10 VPS9D1-AS1 FANCA
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss MC1R SPATA33 DEF8 VPS9D1 CENPBD1 DPEP1 CDK10 VPS9D1-AS1 AFG3L1P FANCA LOC105371419 CHMP1A SPIRE2 SPATA2L GAS8-AS1 DBNDD1 ZNF276 GAS8 TCF25 TUBB3 LOC107984817
nsv457623 Chr.16:89664419 - 89853617 on Build GRCh38 Gain LOC105371419 SPIRE2 SPATA33 VPS9D1 SPATA2L ZNF276 CDK10 VPS9D1-AS1 LOC107984817 FANCA
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss RPL13 ZNF778 DEF8 CENPBD1 SPG7 CDK10 SNORD68 VPS9D1-AS1 AFG3L1P FANCA URAHP LOC101927817 LOC105371419 SPIRE2 LOC100287036 LOC105371414 DBNDD1 ZNF276 GAS8 LOC107984817 TUBB8P7 MC1R PRDM7 SPATA33 VPS9D1 DPEP1 CHMP1A ANKRD11 CPNE7 SPATA2L GAS8-AS1 TCF25 TUBB3 FAM157C
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss LOC105371419 SPIRE2 ZNF276 LOC107984817 FANCA
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC400558 RPL13 RNF166 CENPBD1 LOC100129697 SPG7 SNORD68 FANCA URAHP LOC100289580 APRT CDT1 LOC105371414 LOC107984817 IL17C LOC339059 VPS9D1 LOC105371409 CDH15 SNAI3-AS1 CTU2 LOC107987238 ANKRD11 CPNE7 CYBA PIEZO1 GALNS FAM157C LOC101927793 ZNF778 DEF8 SNAI3 CBFA2T3 MVD CDK10 VPS9D1-AS1 AFG3L1P LOC101927817 LOC105371419 SPIRE2 PABPN1L TRAPPC2L LOC100287036 MIR4722 DBNDD1 ZNF276 GAS8 SLC22A31 TUBB8P7 MC1R PRDM7 SPATA33 DPEP1 CHMP1A SPATA2L GAS8-AS1 ACSF3 TCF25 TUBB3 LINC00304
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion RPL13 SPATA33 VPS9D1 DPEP1 SPG7 CDK10 SNORD68 VPS9D1-AS1 FANCA CHMP1A CPNE7 SPATA2L ZNF276

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