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See other FANCA CNV Assays ›
Gene Symbol
FANCA
Assay Reference Genome
Location

Chr.16:89745082 on build GRCh38
Cytoband
16q24.3
Assay ID Hs00112477_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 2175

Gene Name:

 Fanconi anemia complementation group A

Gene Aliases:

 FA, FA-H, FA1, FAA, FACA, FAH, FANCH

Location:

 Chr.16:89737551-89816658 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 37 - Exon 38
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FANCA NM_000135.2 NP_000126.2
NM_001286167.1 NP_001273096.1
XM_005256294.4 XP_005256351.1
XM_011522945.2 XP_011521247.1
XM_011522946.2 XP_011521248.1
XM_011522947.2 XP_011521249.1
XM_017023044.1 XP_016878533.1
AK299282.1
AK301168.1
X99226.1 CAA67610.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1931 Chr.16:89713649 - 89746701 on Build GRCh38 Insertion FANCA VPS9D1 VPS9D1-AS1 ZNF276
nsv573744 Chr.16:89738447 - 89915950 on Build GRCh38 Loss FANCA LOC105371419 LOC107984817 SPIRE2 TCF25 ZNF276
nsv952079 Chr.16:89685593 - 89749492 on Build GRCh38 Deletion FANCA VPS9D1 SPATA2L CDK10 VPS9D1-AS1 ZNF276
nsv573743 Chr.16:89664419 - 89853617 on Build GRCh38 Gain SPATA33 FANCA VPS9D1 LOC105371419 SPATA2L LOC107984817 SPIRE2 CDK10 VPS9D1-AS1 ZNF276
esv2762221 Chr.16:89610380 - 90039318 on Build GRCh38 Gain+Loss SPATA33 TUBB3 FANCA CENPBD1 TCF25 CDK10 VPS9D1-AS1 DPEP1 MC1R VPS9D1 CHMP1A LOC105371419 SPATA2L LOC107984817 GAS8 SPIRE2 ZNF276 GAS8-AS1 DBNDD1 DEF8 AFG3L1P
nsv428331 Chr.16:89216635 - 90185980 on Build GRCh38 Gain+Loss PRDM7 CENPBD1 TCF25 CDK10 URAHP LOC101927817 MC1R SNORD68 VPS9D1 CHMP1A LOC105371419 SPATA2L TUBB8P7 DEF8 SPATA33 TUBB3 FANCA ZNF778 VPS9D1-AS1 CPNE7 DPEP1 ANKRD11 RPL13 LOC105371414 LOC107984817 GAS8 SPIRE2 SPG7 FAM157C ZNF276 GAS8-AS1 LOC100287036 DBNDD1 AFG3L1P
nsv833331 Chr.16:89726091 - 89849806 on Build GRCh38 Gain+Loss FANCA LOC105371419 LOC107984817 SPIRE2 ZNF276
nsv482951 Chr.16:88633593 - 90228345 on Build GRCh38 Loss LOC339059 TRAPPC2L CENPBD1 CDK10 MC1R CBFA2T3 CHMP1A LOC105371419 LOC400558 MVD DEF8 TUBB3 FANCA CDH15 SLC22A31 ZNF778 VPS9D1-AS1 CPNE7 CTU2 DPEP1 CDT1 LOC107987238 RNF166 SNAI3 LOC107984817 ZNF276 LOC100287036 AFG3L1P APRT GALNS PRDM7 SNAI3-AS1 LOC101927793 LOC100129697 TCF25 URAHP LOC101927817 PIEZO1 SNORD68 VPS9D1 SPATA2L TUBB8P7 LOC105371409 ACSF3 SPATA33 CYBA ANKRD11 RPL13 LOC105371414 LOC100289580 IL17C GAS8 SPIRE2 PABPN1L SPG7 FAM157C GAS8-AS1 MIR4722 DBNDD1 LINC00304
nsv509639 Chr.16:89513538 - 89775915 on Build GRCh38 Insertion SPATA33 FANCA CDK10 VPS9D1-AS1 CPNE7 DPEP1 SNORD68 VPS9D1 RPL13 CHMP1A SPATA2L SPG7 ZNF276

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