Hs00124079_cn

• Gene Symbol: TRIM33
• Assay Reference Genome Location: Chr.1:114397276 on build GRCh38
• Cytoband: 1p13.2

Target Gene Details

• Entrez Gene ID: 51592
• Gene Name: tripartite motif containing 33
• Gene Aliases: ECTO, PTC7, RFG7, TF1G, TIF1G, TIF1GAMMA, TIFGAMMA
• Location: Chr.1:114392777-114511160 on Build GRCh38
• Assay Gene Location: Within Exon 21

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TRIM33	NM_015906.3	20	3840	NP_056990.3
	NM_033020.2	19	3789	NP_148980.2
	XM_005270936.3	21	3833	XP_005270993.1
	XM_005270937.3	20	3782	XP_005270994.1
	XM_011541568.2	21	3830	XP_011539870.1
	XM_017001452.1	18	3115	XP_016856941.1
	XM_017001453.1	17	3064	XP_016856942.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv28734	Chr.1:114376708 - 115005298 on Build GRCh38	Loss	DENND2C TRIM33 AMPD1 SIKE1 SYCP1 BCAS2 CSDE1 NRAS
esv3587262	Chr.1:114396576 - 114425946 on Build GRCh38	Loss	TRIM33

More Information

Additional Information:

For this assay, SNP(s) [rs75224258] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
protein ubiquitination
regulation of transforming growth factor beta receptor signaling pathway
negative regulation of BMP signaling pathway
negative regulation of transcription, DNA-templated

Function(s)

DNA binding
ubiquitin-protein transferase activity
protein binding
zinc ion binding
ligase activity
co-SMAD binding
R-SMAD binding