Hs00166366_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154516052 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2	1	191	NP_001164603.1
	NM_001171133.2	1	191	NP_001164604.1
	NM_001171134.2	1	191	NP_001164605.1
	NM_001282311.1	1	191	NP_001269240.1
	NM_001282312.1	1	191	NP_001269241.1
	NM_021806.3	1	191	NP_068578.2
	XM_005274714.3	1	138	XP_005274771.1
	XM_005274716.3	1	138	XP_005274773.1
	XM_005277879.4	1	197	XP_005277936.1
	XM_006724831.2	1	138	XP_006724894.1
	XM_006724832.3	1	197	XP_006724895.1
	XM_006724833.2	1	138	XP_006724896.1
	XM_006724834.2	1	99	XP_006724897.1
	XM_017029699.1	1	198	XP_016885188.1
	XM_017029700.1	1	197	XP_016885189.1
	XM_017029701.1	1	197	XP_016885190.1
	AK024601.1	1	148
	AK057945.1	1	65
	AK294116.1	1	154
	AK314682.1	1	109
	AL539139.3	1	191
	BC002934.1	1	95	AAH02934.1
	BM457676.1	1	173
	CX867071.1	1	109
	X87193.1			CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	OPN1MW2 ATP6AP1 GDI1 H2AFB3 TMEM187 UBL4A SLC10A3 H2AFB1 SNORA56 MPP1 LAGE3 FAM3A F8A2 RAB39B LOC105373386 F8A3 SMIM9 FAM223B FLNA MIR3202-2 DKC1 TAZ MIR3202-1 MIR1184-1 G6PD MECP2 CTAG2 CTAG1A VBP1 FAM223A TMLHE DNASE1L1 LOC107987332 TMLHE-AS1 TEX28 F8 OPN1LW IRAK1 CTAG1B SNORA70 RPL10 IKBKG MIR6858 HCFC1-AS1 LOC101927830 F8A1 TKTL1 MIR664B MTCP1 HCFC1 FUNDC2 EMD PLXNA3 OPN1MW CH17-340M24.3 MIR1184-3 H2AFB2 MIR1184-2 MIR718 SPRY3 OPN1MW3 CMC4 BRCC3 SNORA36A CLIC2 FAM50A GAB3
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	OPN1MW2 ATP6AP1 GDI1 SNORA70 RPL10 UBL4A SLC10A3 LAGE3 IKBKG FAM3A LOC105373386 MIR6858 TKTL1 FLNA EMD TAZ PLXNA3 OPN1MW CH17-340M24.3 G6PD MECP2 CTAG1A FAM223A DNASE1L1 OPN1MW3 LOC107987332 TEX28 OPN1LW FAM50A
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	OPN1MW2 ATP6AP1 GDI1 BGN TMEM187 UBL4A SLC10A3 LAGE3 FAM3A DUSP9 LOC105373386 SLC6A8 PNMA6A FLNA ZFP92 AVPR2 MIR3202-2 LOC107983954 RENBP L1CAM TAZ MIR3202-1 G6PD MECP2 CTAG1A FAM223A LCA10 MAGEA1 DNASE1L1 SSR4 LOC107987332 TEX28 ZNF275 LOC105373377 OPN1LW IRAK1 SNORA70 HAUS7 RPL10 IKBKG MIR6858 PNCK HCFC1-AS1 TKTL1 HCFC1 EMD PLXNA3 OPN1MW CH17-340M24.3 PLXNB3 ARHGAP4 BCAP31 TREX2 MIR718 LOC105373378 OPN1MW3 ABCD1 IDH3G LOC105373383 ATP2B3 PDZD4 FAM58A NAA10 SRPK3 LOC105373381 FAM50A
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	G6PD CTAG1A FAM223A IKBKG FAM3A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function