Hs00166366_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154516052 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2	1	191	NP_001164603.1
	NM_001171133.2	1	191	NP_001164604.1
	NM_001171134.2	1	191	NP_001164605.1
	NM_001282311.1	1	191	NP_001269240.1
	NM_001282312.1	1	191	NP_001269241.1
	NM_021806.3	1	191	NP_068578.2
	XM_005274714.3	1	138	XP_005274771.1
	XM_005274716.3	1	138	XP_005274773.1
	XM_005277879.4	1	197	XP_005277936.1
	XM_006724831.2	1	138	XP_006724894.1
	XM_006724832.3	1	197	XP_006724895.1
	XM_006724833.2	1	138	XP_006724896.1
	XM_006724834.2	1	99	XP_006724897.1
	XM_017029699.1	1	198	XP_016885188.1
	XM_017029700.1	1	197	XP_016885189.1
	XM_017029701.1	1	197	XP_016885190.1
	AK024601.1	1	148
	AK057945.1	1	65
	AK294116.1	1	154
	AK314682.1	1	109
	AL539139.3	1	191
	BC002934.1	1	95	AAH02934.1
	BM457676.1	1	173
	CX867071.1	1	109
	X87193.1			CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	SPRY3 FAM50A HCFC1 CTAG1B SLC10A3 TMLHE-AS1 H2AFB1 MTCP1 FAM3A LAGE3 TAZ LOC105373386 CLIC2 F8A2 RAB39B F8A1 F8 FAM223A SNORA56 H2AFB2 OPN1LW CMC4 TMEM187 BRCC3 TEX28 MECP2 MIR1184-3 VBP1 SNORA36A SNORA70 UBL4A SMIM9 G6PD GDI1 H2AFB3 GAB3 MPP1 PLXNA3 MIR6858 MIR1184-2 EMD IRAK1 ATP6AP1 OPN1MW OPN1MW3 MIR1184-1 RPL10 FLNA CTAG2 TKTL1 TMLHE FAM223B IKBKG MIR718 OPN1MW2 LOC101927830 CH17-340M24.3 F8A3 DNASE1L1 LOC107987332 MIR3202-2 MIR3202-1 FUNDC2 DKC1 CTAG1A HCFC1-AS1 MIR664B
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	G6PD GDI1 FAM50A PLXNA3 MIR6858 SLC10A3 EMD ATP6AP1 FAM3A LAGE3 TAZ OPN1MW LOC105373386 OPN1MW3 FAM223A RPL10 FLNA OPN1LW TKTL1 TEX28 MECP2 IKBKG OPN1MW2 CH17-340M24.3 DNASE1L1 LOC107987332 SNORA70 CTAG1A UBL4A
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	ABCD1 ZFP92 LCA10 SSR4 ATP2B3 FAM58A FAM50A HCFC1 MAGEA1 SLC10A3 BGN AVPR2 PNCK PNMA6A FAM3A LAGE3 TAZ LOC105373386 FAM223A OPN1LW LOC105373383 TMEM187 NAA10 TEX28 SRPK3 MECP2 HAUS7 SNORA70 BCAP31 ZNF275 UBL4A DUSP9 L1CAM LOC105373377 G6PD GDI1 PLXNB3 PLXNA3 MIR6858 EMD IRAK1 ATP6AP1 ARHGAP4 OPN1MW RENBP OPN1MW3 LOC107983954 RPL10 FLNA TKTL1 SLC6A8 IKBKG PDZD4 MIR718 OPN1MW2 CH17-340M24.3 DNASE1L1 LOC107987332 IDH3G TREX2 LOC105373378 MIR3202-2 MIR3202-1 CTAG1A HCFC1-AS1 LOC105373381
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	FAM223A G6PD FAM3A CTAG1A IKBKG

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function