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See other FAM234A CNV Assays ›
Gene Symbol
FAM234A
Assay Reference Genome
Location

Chr.16:269248 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00292754_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 83986

Gene Name:

 family with sequence similarity 234 member A

Gene Aliases:

 C16orf9, ITFG3, gs19

Location:

 Chr.16:234546-269943 on Build GRCh38

Assay Gene Location:

 Within Intron 18
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FAM234A NR_104317.1
AK294581.1

Target Gene Details

Entrez Gene ID:

 8786

Gene Name:

 regulator of G-protein signaling 11

Gene Aliases:

 RS11

Location:

 Chr.16:268301-275943 on Build GRCh38

Assay Gene Location:

 Within Exon 20
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
RGS11 NM_001286485.1 16 1424 NP_001273414.1
NM_001286486.1 15 1292 NP_001273415.1
NM_003834.2 17 1468 NP_003825.1
NM_183337.2 17 1457 NP_899180.1
XM_011522719.2 18 1551 XP_011521021.1
XM_011522720.2 18 1491 XP_011521022.1
AB016929.1 BAA74751.1
AB209582.1 9 3365 BAD92819.1
AF035153.1 17 1428 AAC69175.1
AF035154.1 17 1439 AAC69176.1
AK091701.1 15 1289
AK293564.1
BC141803.1 17 1432

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC106660606 NOXO1 FAHD1 MIR3180-5 RHOT2 ECI1 LOC105371184 TPSB2 CLCN7 C1QTNF8 TPSD1 LOC105371045 SSTR5-AS1 MAPK8IP3 RGS11 SNORA78 EME2 MIR4717 METTL26 PIGQ RPL23AP5 IFT140 SNORD60 MIR6768 RPUSD1 NARFL MIR3677 SNHG9 MRPS34 LOC105371038 NUBP2 LOC105371047 LMF1-AS1 MIR3176 LOC107987233 DECR2 DNASE1L2 CHTF18 TPSG1 CACNA1H SNRNP25 LUC7L RAB26 MRPL28 HBM CCDC154 FLJ42627 PGP TBC1D24 RHBDF1 SNORA64 WDR24 NTHL1 MIR4516 LOC105371046 MSRB1 RPL3L FBXL16 LINC00254 LOC729652 RHBDL1 PRR35 FAM173A TBL3 AXIN1 SSTR5 AMDHD2 JMJD8 HBQ1 METRN E4F1 LOC105371049 PDIA2 FAM234A C16orf59 TRAF7 NME4 UNKL WASIR2 SPSB3 LOC101929280 RPS2 SNORA10 PRSS29P CRAMP1 PKD1 RAB40C STUB1 CCDC78 WFIKKN1 NME3 HBA1 CCNF GNPTG MIR940 MIR662 HBZ GFER ZNF598 NPW MIR6767 MPG HN1L LMF1 CASKIN1 RNPS1 TSR3 MIR6859-4 NDUFB10 POLR3K HAGHL BRICD5 KCTD5 CAPN15 SLC9A3R2 UBE2I MIR3178 RAB11FIP3 IGFALS LOC100134368 HAGH CEMP1 MIR5587 MEIOB TELO2 PTX4 NHLRC4 DDX11L10 LINC00235 RNF151 LOC107984876 PRSS27 MIR3177 ATP6V0C BAIAP3 NPRL3 PDPK1 ERVK13-1 WDR90 NTN3 ABCA3 LOC100287175 GNG13 PRR25 TMEM8A TSC2 ARHGDIG C16orf91 HS3ST6 HBA2 MLST8 TPSAB1 MIR1225 ABCA17P LOC652276 SNHG19 MSLN SYNGR3 MCRIP2 MIR6511B1 TMEM204 SOX8
esv3570031 Chr.16:243389 - 278107 on Build GRCh38 Gain FAM234A RGS11
esv3637563 Chr.16:263248 - 505590 on Build GRCh38 Gain RAB11FIP3 FAM234A LOC100134368 NME4 RPL23AP5 MRPL28 DECR2 AXIN1 RGS11 TMEM8A ARHGDIG PDIA2
nsv827477 Chr.16:262247 - 297639 on Build GRCh38 Gain FAM234A AXIN1 RGS11 ARHGDIG PDIA2
esv3637561 Chr.16:261769 - 271795 on Build GRCh38 Loss FAM234A RGS11
dgv32n68 Chr.16:245507 - 476226 on Build GRCh38 Loss RAB11FIP3 FAM234A LOC100134368 NME4 RPL23AP5 MRPL28 DECR2 AXIN1 RGS11 TMEM8A ARHGDIG PDIA2

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More Information


Additional Information:

For this assay, SNP(s) [rs116377490] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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