Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2956 | NP_067051.2 |
| XM_005259122.4 | 7 | 3239 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2881 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2683 | XP_016882572.1 | |
| AK024444.1 | 7 | 2956 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 347 | AAH18398.1 | |
| BC053992.1 | 6 | 2843 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 SCAF1
BCL2L12
PRMT1
IRF3
PRRG2
NOSIP
MIR5088
CPT1C
ADM5
PRR12
RRAS
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
SCAF1
BCL2L12
PRMT1
IRF3
PRRG2
NOSIP
MIR5088
CPT1C
ADM5
PRR12
RRAS
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
FLJ26850
SLC17A7
LIG1
RCN3
CCDC114
NUCB1-AS1
SNAR-A5
CGB1
LMTK3
LOC100287477
KCNA7
FUT2
PLA2G4C-AS1
ZNF473
SNORD33
BSPH1
SNORD35A
PTOV1
NTN5
EMP3
RPS11
MIR4749
SNORD34
CGB5
RPL13A
C19orf73
SNAR-A3
RPL18
SNAR-C1
ADM5
ATF5
DKKL1
PTH2
SCAF1
BAX
SNAR-G1
PRR12
SNORD32A
SNAR-C2
TMEM143
LOC105447645
CGB8
CYTH2
CPT1C
SNAR-B1
MAMSTR
VRK3
KCNJ14
IZUMO1
MED25
SNAR-A7
CD37
CGB2
SNAR-A1
SNAR-A9
FLT3LG
SPHK2
SNAR-A11
SNAR-A8
AP2A1
CGB7
PRMT1
SNRNP70
SNAR-C4
LOC101928295
SEC1P
SNAR-B2
GFY
HRC
SLC6A16
NUCB1
TEAD2
SYNGR4
FGF21
DBP
GYS1
HSD17B14
PPP1R15A
FAM83E
PRRG2
NOSIP
TSKS
CABP5
SNAR-D
SIGLEC11
PTOV1-AS2
RRAS
SNAR-C3
SNORD35B
GRIN2D
PPFIA3
GRWD1
MIR4750
MIR5088
MIR6799
ZNF114
FCGRT
LIN7B
SNAR-A14
IL4I1
CARD8-AS1
FUT1
IRF3
FTL
ALDH16A1
PNKP
SULT2B1
PTOV1-AS1
MIR6798
TRPM4
MIR150
MIR4751
TULP2
BCL2L12
NTF4
PIH1D1
CCDC155
SNAR-A12
FUZ
C19orf68
MIR4324
CA11
PLA2G4C
RUVBL2
LHB
AKT1S1
PLEKHA4
SNAR-A2
SIGLEC16
SPACA4
BCAT2
SNAR-A10
MIR6800
SNAR-G2
NUP62
TBC1D17
KDELR1
SNAR-A13
LOC101059948
DHDH
RASIP1
CGB3
CARD8
SNAR-A4
SNAR-C5
LOC105372430
SNAR-A6
ELSPBP1
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
BCL2L12
MIR5088
MIR6799
ADM5
MIR6800
FUZ
AP2A1
SCAF1
PRMT1
IRF3
TSKS
CPT1C
PRR12
PTOV1
MED25
PTOV1-AS2
RRAS
MIR4749
PTOV1-AS1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
SCAF1
BCL2L12
PRMT1
IRF3
PRRG2
NOSIP
MIR5088
CPT1C
ADM5
PRR12
RRAS
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
MIR4751
BCL2L12
FUZ
PRRG2
NOSIP
TSKS
AKT1S1
CPT1C
PTOV1
MED25
PTOV1-AS2
RRAS
MIR4749
MIR4750
MIR5088
MIR6799
ADM5
MIR6800
ATF5
NUP62
TBC1D17
AP2A1
IL4I1
SCAF1
PRMT1
IRF3
PNKP
PRR12
PTOV1-AS1
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
SNORD32A
MIR150
BCL2L12
RCN3
FUZ
PRRG2
NOSIP
TSKS
CPT1C
SNORD33
SNORD35A
MED25
RPS11
RRAS
SNORD35B
SNORD34
MIR5088
RPL13A
MIR6799
ADM5
MIR6800
FCGRT
AP2A1
SCAF1
PRMT1
IRF3
PRR12
PTOV1-AS1
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
SCAF1
BCL2L12
PRMT1
IRF3
PRRG2
NOSIP
PRR12
RRAS
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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