Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2956 | NP_067051.2 |
| XM_005259122.4 | 7 | 3239 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2881 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2683 | XP_016882572.1 | |
| AK024444.1 | 7 | 2956 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 347 | AAH18398.1 | |
| BC053992.1 | 6 | 2843 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 NOSIP
RRAS
PRMT1
PRRG2
IRF3
MIR5088
ADM5
SCAF1
BCL2L12
CPT1C
PRR12
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
NOSIP
RRAS
PRMT1
PRRG2
IRF3
MIR5088
ADM5
SCAF1
BCL2L12
CPT1C
PRR12
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
RCN3
TMEM143
MIR4749
SNAR-A2
SNAR-C4
SPACA4
SNAR-A7
SNAR-A5
TRPM4
SNAR-C1
CCDC155
MIR4750
FUT2
NUCB1
NTN5
EMP3
SNAR-A8
SIGLEC11
SNORD35B
LIG1
MIR4324
C19orf68
CARD8-AS1
LIN7B
LOC105372430
CGB1
LOC101059948
SCAF1
RUVBL2
SNAR-A1
CGB2
ATF5
SNORD35A
LMTK3
FLT3LG
SNAR-A3
MAMSTR
IL4I1
SNAR-B1
SNAR-A13
GYS1
SNAR-A11
HSD17B14
NUP62
SNAR-A4
CGB7
DHDH
SNORD33
AP2A1
SIGLEC16
FAM83E
MIR6799
SNAR-B2
SNAR-A12
RPS11
PTH2
PTOV1-AS1
MIR150
SPHK2
ZNF473
CGB3
DKKL1
SNAR-C3
BCL2L12
PTOV1-AS2
SNRNP70
MIR6800
TSKS
PPFIA3
SNAR-C2
RRAS
FUZ
SNAR-A9
LHB
VRK3
MIR6798
KDELR1
DBP
GFY
LOC101928295
LOC100287477
FLJ26850
IZUMO1
CABP5
BSPH1
SLC17A7
SLC6A16
IRF3
MIR5088
CARD8
PNKP
CPT1C
FUT1
CYTH2
SNAR-A14
RASIP1
ADM5
SNORD34
SNORD32A
SNAR-D
RPL13A
SEC1P
NOSIP
MED25
PPP1R15A
ELSPBP1
TULP2
FCGRT
PRRG2
SNAR-G1
KCNA7
CCDC114
C19orf73
SNAR-A6
PIH1D1
BCAT2
NUCB1-AS1
CGB5
SNAR-A10
CD37
CA11
LOC105447645
PLA2G4C
FTL
PTOV1
SNAR-C5
PLEKHA4
PRR12
TEAD2
PLA2G4C-AS1
ZNF114
NTF4
BAX
PRMT1
SYNGR4
ALDH16A1
FGF21
MIR4751
CGB8
GRIN2D
RPL18
AKT1S1
KCNJ14
TBC1D17
SULT2B1
HRC
SNAR-G2
GRWD1
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
RRAS
PRMT1
IRF3
MIR5088
ADM5
SCAF1
BCL2L12
CPT1C
PRR12
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
IL4I1
MIR4749
PRRG2
NUP62
IRF3
MIR4750
PTOV1
MIR5088
AP2A1
MIR6799
PNKP
CPT1C
PRR12
PTOV1-AS1
PRMT1
MIR4751
ADM5
SCAF1
BCL2L12
PTOV1-AS2
MIR6800
AKT1S1
TSKS
NOSIP
ATF5
MED25
RRAS
FUZ
TBC1D17
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
NOSIP
RRAS
PRMT1
PRRG2
IRF3
MIR5088
ADM5
SCAF1
BCL2L12
CPT1C
PRR12
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
RCN3
FCGRT
PRRG2
IRF3
MIR5088
SNORD33
SNORD35B
AP2A1
MIR6799
CPT1C
RPS11
PRR12
PTOV1-AS1
PRMT1
MIR150
ADM5
SNORD34
SNORD32A
SCAF1
BCL2L12
RPL13A
MIR6800
TSKS
NOSIP
MED25
SNORD35A
RRAS
FUZ
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
NOSIP
RRAS
PRMT1
PRRG2
IRF3
SCAF1
BCL2L12
PRR12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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