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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32934664 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00352216_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 BAD92814.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CD742571.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain HLA-DMB BRD2 LOC100294145 HLA-DMA
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DMB BRD2 HLA-DOA LOC100294145 HLA-DMA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion KIFC1 PRRT1 PRRC2A LTA PFDN6 LTB HLA-DRB5 GPANK1 HLA-DPA1 HSPA1L HLA-DOB APOM C6orf47 TNXA HLA-DQB2 LST1 SNORD117 SAPCD1-AS1 SLC39A7 PBX2 HLA-DOA MIR6721 HSD17B8 ZBTB12 BTNL2 DDX39B SNORD52 MICB HLA-DRB6 ZBTB22 PPT2 SYNGAP1 PSMB9 HLA-DQA2 CUTA NELFE VWA7 RXRB ABHD16A CLIC1 DDX39B-AS1 CYP21A1P LY6G5B HLA-DQA1 HSPA1B SKIV2L PPP1R2P1 RING1 HLA-DMB DXO MIR6833 GPSM3 ZBTB9 COL11A2 MSH5-SAPCD1 VARS SNORA38 PSMB8-AS1 NEU1 HCG25 PSMB8 MIR3135B EHMT2 MIR4646 LOC101929163 HLA-DPB2 MCCD1 HLA-DRA LY6G6C CYP21A2 LOC102725068 LY6G5C HLA-DQB1 STK19 PHF1 AGER HCG24 ATF6B SNORD84 CFB FKBPL HLA-DRB1 C6orf10 LSM2 TAP2 HCG23 MIR5004 LY6G6E TNXB SLC44A4 RGL2 C4A HLA-DMA LOC100507547 DDAH2 RNF5 AIF1 MIR6834 RPS18 CSNK2B SNORD48 LOC100294145 EGFL8 AGPAT1 MIR6832 MSH5 MIR6873 ATP6V1G2 LOC100287329 HSPA1A HCP5 PPT2-EGFL8 BRD2 LY6G6D BAG6 WDR46 LY6G6F NOTCH4 HLA-DQB1-AS1 C2-AS1 NFKBIL1 TAP1 MIR1236 NCR3 VPS52 C4B MIR219A1 SAPCD1 HCG26 C6orf25 C6orf48 HLA-DPB1 ATP6V1G2-DDX39B C2 DAXX B3GALT4 TAPBP TNF
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion KIFC1 PRRT1 PRRC2A LTA PFDN6 LTB HLA-DRB5 GPANK1 HLA-DPA1 HSPA1L HLA-DOB APOM C6orf47 TNXA HLA-DQB2 LST1 SNORD117 SAPCD1-AS1 SLC39A7 PBX2 HLA-DOA MIR6721 HSD17B8 ZBTB12 BTNL2 DDX39B SNORD52 MICB HLA-DRB6 ZBTB22 PPT2 SYNGAP1 PSMB9 HLA-DQA2 CUTA NELFE VWA7 RXRB ABHD16A CLIC1 DDX39B-AS1 CYP21A1P LY6G5B HLA-DQA1 HSPA1B SKIV2L PPP1R2P1 RING1 HLA-DMB DXO MIR6833 GPSM3 ZBTB9 COL11A2 MSH5-SAPCD1 VARS SNORA38 PSMB8-AS1 NEU1 HCG25 PSMB8 MIR3135B EHMT2 MIR4646 LOC101929163 HLA-DPB2 MCCD1 HLA-DRA LY6G6C CYP21A2 LOC102725068 LY6G5C HLA-DQB1 STK19 PHF1 AGER HCG24 ATF6B SNORD84 CFB FKBPL HLA-DRB1 C6orf10 LSM2 TAP2 HCG23 MIR5004 LY6G6E TNXB SLC44A4 RGL2 C4A HLA-DMA LOC100507547 DDAH2 RNF5 AIF1 MIR6834 RPS18 CSNK2B SNORD48 LOC100294145 EGFL8 AGPAT1 MIR6832 MSH5 MIR6873 ATP6V1G2 LOC100287329 HSPA1A HCP5 PPT2-EGFL8 BRD2 LY6G6D BAG6 WDR46 LY6G6F NOTCH4 HLA-DQB1-AS1 C2-AS1 NFKBIL1 TAP1 MIR1236 NCR3 VPS52 C4B MIR219A1 SAPCD1 HCG26 C6orf25 C6orf48 HLA-DPB1 ATP6V1G2-DDX39B C2 DAXX B3GALT4 TAPBP TNF
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss TAP2 PSMB8 TAP1 PPP1R2P1 HLA-DMB BRD2 LOC100294145 PSMB9 HLA-DMA PSMB8-AS1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion KIFC1 MIR6873 RXRB BRD2 PHF1 PFDN6 HCG24 HLA-DQA1 WDR46 HLA-DPA1 HLA-DQB1-AS1 PPP1R2P1 RING1 HLA-DOB HLA-DMB ZBTB9 COL11A2 PSMB8-AS1 HLA-DQB2 TAP2 MIR5004 HCG25 PSMB8 TAP1 MIR3135B SLC39A7 VPS52 MIR219A1 RGL2 HLA-DOA HSD17B8 HLA-DMA HLA-DPB2 HLA-DPB1 MIR6834 RPS18 DAXX ZBTB22 SYNGAP1 LOC100294145 HLA-DQB1 PSMB9 HLA-DQA2 B3GALT4 TAPBP CUTA

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