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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32934664 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00352216_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 BAD92814.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CD742571.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain LOC100294145 HLA-DMA HLA-DMB BRD2
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss LOC100294145 HLA-DMA HLA-DMB BRD2 HLA-DOA
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMA HLA-DMB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion RXRB ATP6V1G2-DDX39B VARS SNORA38 C4B STK19 PRRC2A EGFL8 C4A DAXX B3GALT4 AIF1 LY6G5C PRRT1 NEU1 RGL2 C2-AS1 MIR6833 SYNGAP1 GPANK1 HLA-DRA HLA-DRB5 PSMB9 C6orf47 HLA-DMB HLA-DPB2 C6orf10 BAG6 MIR1236 ATF6B MIR219A1 HSPA1A TAPBP HSD17B8 RNF5 VPS52 EHMT2 ZBTB12 SNORD84 CSNK2B TNXA SLC44A4 SNORD52 ATP6V1G2 NELFE LOC100507547 SAPCD1 LTA LOC102725068 DDAH2 MSH5-SAPCD1 AGER PFDN6 HCP5 SAPCD1-AS1 MIR5004 HLA-DMA KIFC1 LY6G6F HLA-DQA2 FKBPL RING1 CFB LOC100294145 ABHD16A RPS18 HCG23 HLA-DPA1 MICB HLA-DQB1-AS1 COL11A2 SLC39A7 NFKBIL1 NOTCH4 MIR3135B LY6G6D PSMB8-AS1 MIR6721 HLA-DRB1 NCR3 C2 HSPA1L DDX39B LY6G5B MIR4646 PSMB8 SNORD48 LTB HCG24 MCCD1 BTNL2 LY6G6C DXO LY6G6E CYP21A1P AGPAT1 HLA-DOB TNF HSPA1B HLA-DPB1 TAP2 HLA-DQB2 HLA-DRB6 CYP21A2 HLA-DQB1 BRD2 LOC101929163 TAP1 MIR6834 ZBTB22 VWA7 HCG25 MIR6832 C6orf48 LST1 HLA-DQA1 LSM2 HCG26 CUTA PBX2 WDR46 DDX39B-AS1 CLIC1 C6orf25 PPT2 MIR6873 SNORD117 ZBTB9 PPT2-EGFL8 MSH5 TNXB SKIV2L LOC100287329 GPSM3 HLA-DOA PHF1 APOM PPP1R2P1
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion RXRB ATP6V1G2-DDX39B VARS SNORA38 C4B STK19 PRRC2A EGFL8 C4A DAXX B3GALT4 AIF1 LY6G5C PRRT1 NEU1 RGL2 C2-AS1 MIR6833 SYNGAP1 GPANK1 HLA-DRA HLA-DRB5 PSMB9 C6orf47 HLA-DMB HLA-DPB2 C6orf10 BAG6 MIR1236 ATF6B MIR219A1 HSPA1A TAPBP HSD17B8 RNF5 VPS52 EHMT2 ZBTB12 SNORD84 CSNK2B TNXA SLC44A4 SNORD52 ATP6V1G2 NELFE LOC100507547 SAPCD1 LTA LOC102725068 DDAH2 MSH5-SAPCD1 AGER PFDN6 HCP5 SAPCD1-AS1 MIR5004 HLA-DMA KIFC1 LY6G6F HLA-DQA2 FKBPL RING1 CFB LOC100294145 ABHD16A RPS18 HCG23 HLA-DPA1 MICB HLA-DQB1-AS1 COL11A2 SLC39A7 NFKBIL1 NOTCH4 MIR3135B LY6G6D PSMB8-AS1 MIR6721 HLA-DRB1 NCR3 C2 HSPA1L DDX39B LY6G5B MIR4646 PSMB8 SNORD48 LTB HCG24 MCCD1 BTNL2 LY6G6C DXO LY6G6E CYP21A1P AGPAT1 HLA-DOB TNF HSPA1B HLA-DPB1 TAP2 HLA-DQB2 HLA-DRB6 CYP21A2 HLA-DQB1 BRD2 LOC101929163 TAP1 MIR6834 ZBTB22 VWA7 HCG25 MIR6832 C6orf48 LST1 HLA-DQA1 LSM2 HCG26 CUTA PBX2 WDR46 DDX39B-AS1 CLIC1 C6orf25 PPT2 MIR6873 SNORD117 ZBTB9 PPT2-EGFL8 MSH5 TNXB SKIV2L LOC100287329 GPSM3 HLA-DOA PHF1 APOM PPP1R2P1
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion VPS52 PSMB8-AS1 RXRB HLA-DQA1 CUTA PSMB8 HCG24 DAXX B3GALT4 WDR46 RGL2 PFDN6 SYNGAP1 MIR6873 HLA-DOB PSMB9 MIR5004 HLA-DMA HLA-DPB1 HLA-DMB KIFC1 TAP2 ZBTB9 HLA-DQB2 HLA-DQA2 HLA-DPB2 RING1 LOC100294145 MIR219A1 RPS18 HLA-DPA1 TAPBP HLA-DQB1-AS1 COL11A2 HLA-DQB1 BRD2 HLA-DOA TAP1 SLC39A7 HSD17B8 MIR6834 ZBTB22 PHF1 MIR3135B HCG25 PPP1R2P1
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss LOC100294145 PSMB8-AS1 PSMB9 HLA-DMA HLA-DMB BRD2 TAP2 TAP1 PSMB8 PPP1R2P1

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