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See other TRMT2A CNV Assays ›
Gene Symbol
TRMT2A
Assay Reference Genome
Location

Chr.22:20112308 on build GRCh38
Cytoband
22q11.21
Assay ID Hs00380287_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 27037

Gene Name:

 tRNA methyltransferase 2 homolog A

Gene Aliases:

 HTF9C

Location:

 Chr.22:20111866-20117305 on Build GRCh38

Assay Gene Location:

 Within Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRMT2A NM_001257994.1 12 2544 NP_001244923.1
NM_022727.5 12 2522 NP_073564.3
NM_182984.4 13 2398 NP_892029.2
XM_011530139.2 13 2383 XP_011528441.1
XM_011530141.1 11 1758 XP_011528443.1
XM_011530142.2 9 1416 XP_011528444.1
XM_017028770.1 12 2586 XP_016884259.1
AI539558.1
AK025106.1 BAB15067.1
AK057029.1 BAB71349.1
BC013352.2 AAH13352.2
BC017184.2 13 2284 AAH17184.2
BC108251.1 AAI08252.1
BX349507.2 1 405
CA440188.1 1 460

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv726n67 Chr.22:20070444 - 20324465 on Build GRCh38 Gain MIR3618 LOC440792 MIR1286 DGCR6L RTN4R ZDHHC8 CCDC188 LOC284865 DGCR8 MIR6816 RANBP1 MIR1306 LINC00896 TRMT2A
esv3647284 Chr.22:19985583 - 20137122 on Build GRCh38 Gain MIR3618 TANGO2 ARVCF MIR6816 RANBP1 MIR1306 MIR185 ZDHHC8 TRMT2A DGCR8
esv3893434 Chr.22:19470889 - 20343372 on Build GRCh38 Gain SEPT5-GP1BB LOC101927859 COMT MIR1286 SEPT5 ZDHHC8 CCDC188 TBX1 LOC284865 DGCR8 CLDN5 MIR6816 TXNRD2 MIR1306 LINC00896 TRMT2A UFD1L GNB1L MIR3618 TANGO2 LOC440792 GP1BB DGCR6L MIR185 RTN4R LINC00895 ARVCF RANBP1 C22orf29 CDC45 MIR4761
esv2758825 Chr.22:20038970 - 20321924 on Build GRCh38 Loss MIR3618 TANGO2 LOC440792 MIR1286 DGCR6L RTN4R ZDHHC8 CCDC188 LOC284865 DGCR8 MIR6816 RANBP1 MIR1306 LINC00896 TRMT2A
nsv828939 Chr.22:19696032 - 20324465 on Build GRCh38 Loss SEPT5-GP1BB COMT MIR1286 SEPT5 ZDHHC8 CCDC188 TBX1 LOC284865 DGCR8 MIR6816 TXNRD2 MIR1306 LINC00896 TRMT2A GNB1L MIR3618 TANGO2 LOC440792 GP1BB DGCR6L MIR185 RTN4R ARVCF RANBP1 C22orf29 MIR4761
nsv828938 Chr.22:19691069 - 20324465 on Build GRCh38 Gain SEPT5-GP1BB COMT MIR1286 SEPT5 ZDHHC8 CCDC188 TBX1 LOC284865 DGCR8 MIR6816 TXNRD2 MIR1306 LINC00896 TRMT2A GNB1L MIR3618 TANGO2 LOC440792 GP1BB DGCR6L MIR185 RTN4R ARVCF RANBP1 C22orf29 MIR4761
dgv4480n100 Chr.22:20069620 - 20262667 on Build GRCh38 Gain MIR3618 MIR6816 RANBP1 MIR1306 MIR1286 LINC00896 RTN4R ZDHHC8 TRMT2A CCDC188 LOC284865 DGCR8
nsv471183 Chr.22:20018517 - 20319470 on Build GRCh38 Loss MIR3618 TANGO2 LOC440792 MIR1286 DGCR6L MIR185 RTN4R ZDHHC8 CCDC188 LOC284865 DGCR8 MIR6816 RANBP1 MIR1306 LINC00896 TRMT2A
nsv953027 Chr.22:20085378 - 20303977 on Build GRCh38 Deletion MIR3618 LOC440792 MIR1286 RTN4R ZDHHC8 CCDC188 LOC284865 DGCR8 MIR6816 RANBP1 MIR1306 LINC00896 TRMT2A
nsv834133 Chr.22:20029363 - 20176708 on Build GRCh38 Loss MIR3618 TANGO2 MIR6816 RANBP1 MIR1306 MIR185 ZDHHC8 TRMT2A CCDC188 DGCR8
dgv7983n54 Chr.22:19762002 - 20321870 on Build GRCh38 Gain MIR3618 TANGO2 LOC440792 COMT MIR1286 DGCR6L MIR185 RTN4R ZDHHC8 CCDC188 TBX1 LOC284865 DGCR8 ARVCF MIR6816 RANBP1 C22orf29 TXNRD2 MIR1306 LINC00896 TRMT2A GNB1L MIR4761

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More Information


Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

RNA methyltransferase

Gene Ontology Categories:

Function(s) Process(es)


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