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Gene Symbol
APOM
Assay Reference Genome
Location

Chr.6:31656644 on build GRCh38
Cytoband
6p21.33
Assay ID Hs00390257_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 55937

Gene Name:

 apolipoprotein M

Gene Aliases:

 G3a, HSPC336, NG20, apo-M

Location:

 Chr.6:31652410-31658210 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 3 - Intron 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
APOM NM_001256169.1 NP_001243098.1
NM_019101.2 NP_061974.2
NR_045828.1
XM_006715150.3 XP_006715213.1
AA846749.1
AF118393.3 AAD11443.2
AF161454.1 AAF29014.1
AJ245434.1 CAB51604.1
BC020683.1 AAH20683.1
BF344944.1
BG564719.1
CB054016.1
CN428415.1

Target Gene Details

Entrez Gene ID:

 7917

Gene Name:

 BCL2 associated athanogene 6

Gene Aliases:

 BAG-6, BAT3, D6S52E, G3

Location:

 Chr.6:31639028-31660900 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
BAG6 XM_017011279.1 XP_016866768.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv462871 Chr.6:31607499 - 31664357 on Build GRCh38 Loss PRRC2A AIF1 GPANK1 BAG6 SNORA38 APOM C6orf47 MIR6832
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion MICB SNORD117 MSH5-SAPCD1 FKBPL MIR1236 LY6G6F NEU1 C6orf25 ZBTB12 AIF1 PRRT1 NCR3 RNF5 HSPA1A TNF LST1 APOM CLIC1 VWA7 LTB HLA-DRB6 C2 CYP21A1P DDAH2 GPSM3 TNXB BTNL2 HSPA1B PBX2 ATP6V1G2 SNORD84 BAG6 NOTCH4 SAPCD1-AS1 NFKBIL1 C6orf47 LTA HLA-DRB1 HLA-DRB5 GPANK1 HLA-DRA C6orf48 C4A LOC102725068 EHMT2 C4B MIR6832 AGPAT1 VARS DDX39B-AS1 MIR4646 HCP5 MIR6833 SLC44A4 SAPCD1 LY6G5B LY6G5C PRRC2A SNORD52 PPT2-EGFL8 HCG26 TNXA AGER LOC100287329 PPT2 SNORA38 LY6G6C LSM2 DDX39B CSNK2B HSPA1L ABHD16A NELFE CYP21A2 LOC100507547 ATP6V1G2-DDX39B EGFL8 MSH5 MCCD1 DXO LOC101929163 MIR6721 ATF6B SNORD48 LY6G6E C6orf10 C2-AS1 LY6G6D HCG23 CFB STK19 SKIV2L
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion FKBPL RING1 ZBTB12 HLA-DMB TAPBP RXRB HLA-DQB1 RNF5 APOM CLIC1 VWA7 CUTA C2 CYP21A1P PSMB8 ATP6V1G2 PSMB8-AS1 SNORD84 NFKBIL1 C6orf47 HCG24 B3GALT4 HLA-DRB5 MIR5004 BRD2 C6orf48 LOC102725068 MIR6832 HLA-DQA1 PFDN6 HSD17B8 HLA-DPB1 AGPAT1 PSMB9 VARS SLC44A4 LY6G5C HLA-DOA PRRC2A HCG26 TNXA LOC100287329 LY6G6C DDX39B HSPA1L ZBTB9 ABHD16A ATP6V1G2-DDX39B EGFL8 MSH5 MIR219A1 SNORD48 C6orf10 LY6G6D HCG23 STK19 MICB SNORD117 MSH5-SAPCD1 MIR1236 LOC100294145 LY6G6F NEU1 RPS18 PPP1R2P1 C6orf25 AIF1 PRRT1 NCR3 HSPA1A TNF LST1 HLA-DMA LTB HLA-DRB6 DDAH2 GPSM3 TNXB BTNL2 HSPA1B PBX2 RGL2 BAG6 ZBTB22 NOTCH4 MIR6873 SAPCD1-AS1 LTA HLA-DRB1 MIR3135B GPANK1 HLA-DRA C4A EHMT2 C4B HLA-DQA2 HCG25 DAXX DDX39B-AS1 MIR4646 HCP5 MIR6833 SAPCD1 LY6G5B KIFC1 SNORD52 MIR6834 PPT2-EGFL8 SYNGAP1 TAP1 COL11A2 AGER PPT2 SNORA38 HLA-DOB LSM2 HLA-DQB2 CSNK2B PHF1 NELFE CYP21A2 HLA-DQB1-AS1 LOC100507547 MCCD1 DXO HLA-DPB2 SLC39A7 LOC101929163 MIR6721 VPS52 ATF6B LY6G6E C2-AS1 HLA-DPA1 WDR46 CFB TAP2 SKIV2L
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss MICB SNORD117 MSH5-SAPCD1 MIR1236 LY6G6F NEU1 C6orf25 ZBTB12 AIF1 NCR3 HSPA1A TNF LST1 APOM CLIC1 VWA7 LTB C2 CYP21A1P DDAH2 TNXB HSPA1B ATP6V1G2 SNORD84 BAG6 SAPCD1-AS1 NFKBIL1 C6orf47 LTA GPANK1 C6orf48 C4A LOC102725068 EHMT2 C4B MIR6832 HLA-B VARS DDX39B-AS1 MIR4646 HCP5 SLC44A4 SAPCD1 LY6G5B LY6G5C PRRC2A SNORD52 HCG26 TNXA LOC100287329 SNORA38 LY6G6C LSM2 DDX39B CSNK2B HSPA1L ABHD16A NELFE CYP21A2 ATP6V1G2-DDX39B MICA MSH5 MCCD1 DXO MIR6891 SNORD48 LY6G6E C2-AS1 LY6G6D CFB STK19 SKIV2L
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion FKBPL RING1 ZBTB12 HLA-DMB TAPBP RXRB HLA-DQB1 RNF5 APOM CLIC1 VWA7 CUTA C2 CYP21A1P PSMB8 ATP6V1G2 PSMB8-AS1 SNORD84 NFKBIL1 C6orf47 HCG24 B3GALT4 HLA-DRB5 MIR5004 BRD2 C6orf48 LOC102725068 MIR6832 HLA-DQA1 PFDN6 HSD17B8 HLA-DPB1 AGPAT1 PSMB9 VARS SLC44A4 LY6G5C HLA-DOA PRRC2A HCG26 TNXA LOC100287329 LY6G6C DDX39B HSPA1L ZBTB9 ABHD16A ATP6V1G2-DDX39B EGFL8 MSH5 MIR219A1 SNORD48 C6orf10 LY6G6D HCG23 STK19 MICB SNORD117 MSH5-SAPCD1 MIR1236 LOC100294145 LY6G6F NEU1 RPS18 PPP1R2P1 C6orf25 AIF1 PRRT1 NCR3 HSPA1A TNF LST1 HLA-DMA LTB HLA-DRB6 DDAH2 GPSM3 TNXB BTNL2 HSPA1B PBX2 RGL2 BAG6 ZBTB22 NOTCH4 MIR6873 SAPCD1-AS1 LTA HLA-DRB1 MIR3135B GPANK1 HLA-DRA C4A EHMT2 C4B HLA-DQA2 HCG25 DAXX DDX39B-AS1 MIR4646 HCP5 MIR6833 SAPCD1 LY6G5B KIFC1 SNORD52 MIR6834 PPT2-EGFL8 SYNGAP1 TAP1 COL11A2 AGER PPT2 SNORA38 HLA-DOB LSM2 HLA-DQB2 CSNK2B PHF1 NELFE CYP21A2 HLA-DQB1-AS1 LOC100507547 MCCD1 DXO HLA-DPB2 SLC39A7 LOC101929163 MIR6721 VPS52 ATF6B LY6G6E C2-AS1 HLA-DPA1 WDR46 CFB TAP2 SKIV2L
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss MICB SNORD117 MSH5-SAPCD1 FKBPL MIR1236 LY6G6F NEU1 C6orf25 ZBTB12 AIF1 PRRT1 NCR3 RNF5 HSPA1A TNF LST1 APOM CLIC1 VWA7 LTB C2 CYP21A1P DDAH2 GPSM3 TNXB BTNL2 HSPA1B PBX2 ATP6V1G2 SNORD84 BAG6 NOTCH4 SAPCD1-AS1 NFKBIL1 C6orf47 LTA GPANK1 HLA-DRA C6orf48 C4A LOC102725068 EHMT2 C4B MIR6832 HLA-B AGPAT1 VARS DDX39B-AS1 MIR4646 HCP5 MIR6833 SLC44A4 SAPCD1 LY6G5B LY6G5C PRRC2A SNORD52 PPT2-EGFL8 HCG26 TNXA AGER LOC100287329 PPT2 SNORA38 LY6G6C LSM2 DDX39B CSNK2B HSPA1L ABHD16A NELFE CYP21A2 LOC100507547 ATP6V1G2-DDX39B MICA EGFL8 MSH5 MCCD1 DXO LOC101929163 MIR6721 MIR6891 ATF6B SNORD48 LY6G6E C6orf10 C2-AS1 LY6G6D HCG23 CFB STK19 SKIV2L
nsv1161370 Chr.6:31600692 - 31714252 on Build GRCh38 Deletion ABHD16A BAG6 MIR4646 LY6G6F LY6G5B LY6G5C C6orf47 PRRC2A AIF1 LY6G6E GPANK1 SNORA38 APOM CSNK2B MIR6832
nsv830627 Chr.6:31528437 - 31692173 on Build GRCh38 Loss SNORD117 DDX39B-AS1 LY6G5B LY6G5C PRRC2A AIF1 NCR3 LOC100287329 TNF SNORA38 LST1 DDX39B APOM CSNK2B LTB ABHD16A ATP6V1G2-DDX39B ATP6V1G2 SNORD84 BAG6 MCCD1 NFKBIL1 C6orf47 LTA GPANK1 MIR6832

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More Information


Additional Information:

For this assay, SNP(s) [rs113947529] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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