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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32935583 on build GRCh38
Cytoband
6p21.32
Assay ID Hs00392307_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Within Exon 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 4 955 NP_002109.2
AB209577.1 2 3615 BAD92814.1
AB362554.1 2 159
AB362555.1
AB362556.1
AY645722.1 4 925 AAV97947.1
BC027175.1 4 836 AAH27175.1
CD742571.1 3 458
CR407606.1 4 692 CAG28534.1
EL948395.1 3 388
U15085.1 4 925 AAB60387.1
Z23139.1 4 860 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain HLA-DMA LOC100294145 HLA-DMB BRD2
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DMA HLA-DOA LOC100294145 HLA-DMB BRD2
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMA HLA-DMB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion KIFC1 HLA-DQB1-AS1 HLA-DOA LY6G5B DXO DDX39B-AS1 C4B TNF HSPA1B DDAH2 ZBTB22 HSPA1A LY6G6E SNORA38 RXRB HCG25 SNORD84 MIR6833 MIR5004 WDR46 VPS52 HLA-DPB1 SKIV2L PPP1R2P1 MSH5 PSMB8-AS1 TAP1 LOC101929163 HCG24 BAG6 FKBPL HLA-DMB RPS18 CUTA MSH5-SAPCD1 HLA-DRB5 PHF1 SLC39A7 C6orf25 TNXA C6orf48 C2-AS1 MIR6832 ABHD16A C6orf10 BRD2 MIR1236 MIR6721 HLA-DRB1 HLA-DPA1 CSNK2B HLA-DMA ATP6V1G2-DDX39B RGL2 GPSM3 NCR3 DAXX COL11A2 VARS HLA-DPB2 CYP21A1P PRRC2A MCCD1 HCP5 TNXB AIF1 PPT2-EGFL8 NFKBIL1 AGER PSMB8 APOM PRRT1 SNORD48 MIR6834 B3GALT4 VWA7 SYNGAP1 MIR219A1 LY6G6F HLA-DOB LY6G6C ATP6V1G2 LOC102725068 SNORD52 PFDN6 HLA-DQB1 PBX2 NEU1 C2 MIR3135B C6orf47 C4A BTNL2 SNORD117 CLIC1 HLA-DQA1 RING1 NOTCH4 LTB LY6G6D MIR4646 SAPCD1-AS1 LY6G5C LTA LST1 ZBTB12 ZBTB9 STK19 DDX39B CYP21A2 LOC100507547 LOC100294145 ATF6B SAPCD1 EGFL8 HCG23 HLA-DQA2 LOC100287329 SLC44A4 HLA-DRB6 AGPAT1 MICB TAP2 HSPA1L MIR6873 HLA-DRA HSD17B8 LSM2 PPT2 PSMB9 RNF5 HLA-DQB2 TAPBP EHMT2 GPANK1 NELFE HCG26 CFB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion KIFC1 HLA-DQB1-AS1 HLA-DOA LY6G5B DXO DDX39B-AS1 C4B TNF HSPA1B DDAH2 ZBTB22 HSPA1A LY6G6E SNORA38 RXRB HCG25 SNORD84 MIR6833 MIR5004 WDR46 VPS52 HLA-DPB1 SKIV2L PPP1R2P1 MSH5 PSMB8-AS1 TAP1 LOC101929163 HCG24 BAG6 FKBPL HLA-DMB RPS18 CUTA MSH5-SAPCD1 HLA-DRB5 PHF1 SLC39A7 C6orf25 TNXA C6orf48 C2-AS1 MIR6832 ABHD16A C6orf10 BRD2 MIR1236 MIR6721 HLA-DRB1 HLA-DPA1 CSNK2B HLA-DMA ATP6V1G2-DDX39B RGL2 GPSM3 NCR3 DAXX COL11A2 VARS HLA-DPB2 CYP21A1P PRRC2A MCCD1 HCP5 TNXB AIF1 PPT2-EGFL8 NFKBIL1 AGER PSMB8 APOM PRRT1 SNORD48 MIR6834 B3GALT4 VWA7 SYNGAP1 MIR219A1 LY6G6F HLA-DOB LY6G6C ATP6V1G2 LOC102725068 SNORD52 PFDN6 HLA-DQB1 PBX2 NEU1 C2 MIR3135B C6orf47 C4A BTNL2 SNORD117 CLIC1 HLA-DQA1 RING1 NOTCH4 LTB LY6G6D MIR4646 SAPCD1-AS1 LY6G5C LTA LST1 ZBTB12 ZBTB9 STK19 DDX39B CYP21A2 LOC100507547 LOC100294145 ATF6B SAPCD1 EGFL8 HCG23 HLA-DQA2 LOC100287329 SLC44A4 HLA-DRB6 AGPAT1 MICB TAP2 HSPA1L MIR6873 HLA-DRA HSD17B8 LSM2 PPT2 PSMB9 RNF5 HLA-DQB2 TAPBP EHMT2 GPANK1 NELFE HCG26 CFB
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PPP1R2P1 HLA-DMA LOC100294145 HLA-DMB PSMB8-AS1 TAP1 BRD2 PSMB8 TAP2 PSMB9
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion KIFC1 HLA-DQB1-AS1 HLA-DOA LOC100294145 HCG24 HLA-DMB RPS18 CUTA MIR6834 B3GALT4 SYNGAP1 PHF1 SLC39A7 HLA-DQA2 MIR219A1 HLA-DOB ZBTB22 BRD2 TAP2 HLA-DPA1 PFDN6 HLA-DQB1 HLA-DMA RGL2 RXRB MIR6873 MIR3135B HCG25 HSD17B8 DAXX COL11A2 MIR5004 WDR46 VPS52 HLA-DPB2 HLA-DPB1 PSMB9 PPP1R2P1 HLA-DQA1 HLA-DQB2 RING1 TAPBP PSMB8-AS1 TAP1 PSMB8 ZBTB9

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