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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2286778 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00404592_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 22
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 22 3906 NP_001080.2
AB070929.1 19 3236 BAB86781.1
AB210044.1 21 3732 BAE06126.1
BC140895.1 19 3231
BC146866.1 19 3231
BC151840.1 22 3888
U78735.1 22 3753 AAC50967.1
X97187.1 21 3541 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication SNHG19 AXIN1 LOC100287175 TSR3 DECR2 LOC106660606 LMF1-AS1 MIR4717 METTL26 MIR3176 CHTF18 HBQ1 E4F1 ATP6V0C KCTD5 RPL3L MPG SSTR5-AS1 C16orf59 BAIAP3 TSC2 RHOT2 LINC00235 HAGH SNORA78 TPSB2 PIGQ SNHG9 SOX8 MRPL28 MIR662 NHLRC4 C16orf91 ERVK13-1 C1QTNF8 PGP NPW LOC101929280 RPUSD1 MIR6768 MIR3178 PDIA2 NPRL3 GFER SNORD60 HBZ MIR3677 RPL23AP5 LUC7L HBM NME4 WDR24 MIR1225 RNF151 SYNGR3 RNPS1 RAB11FIP3 RGS11 ECI1 CAPN15 GNG13 MAPK8IP3 IGFALS SLC9A3R2 TPSAB1 MIR5587 FBXL16 SSTR5 JMJD8 MCRIP2 DDX11L10 TMEM8A PKD1 MIR3180-5 MIR6511B1 WASIR2 MIR6767 NARFL PRSS27 CCDC78 HBA1 RHBDF1 PRSS29P RAB40C CCNF MIR3177 CACNA1H UBE2I EME2 MIR940 LOC100134368 SNRNP25 HN1L RAB26 AMDHD2 RHBDL1 LMF1 PDPK1 HS3ST6 POLR3K TBC1D24 METRN LOC107987233 ZNF598 TPSD1 CEMP1 SPSB3 MSLN RPS2 MIR4516 FAM173A MLST8 PTX4 NUBP2 BRICD5 WFIKKN1 LOC105371047 LOC105371046 TELO2 HBA2 LOC652276 CRAMP1 CCDC154 NTHL1 NOXO1 PRR25 HAGHL SNORA64 MSRB1 FLJ42627 LOC107984876 LOC105371038 NDUFB10 TMEM204 FAHD1 LOC105371184 LOC105371049 ABCA17P SNORA10 STUB1 ABCA3 NTN3 LOC729652 DNASE1L2 WDR90 TRAF7 TPSG1 IFT140 NME3 MRPS34 UNKL GNPTG FAM234A CASKIN1 MIR6859-4 MEIOB PRR35 TBL3 ARHGDIG CLCN7 LOC105371045 LINC00254
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss SNHG19 SNORD60 MIR3677 RAB26 LOC106660606 MIR1225 SYNGR3 RNPS1 ECI1 MIR4717 LOC105371049 ZNF598 SLC9A3R2 E4F1 ABCA3 MIR4516 DNASE1L2 TSC2 TRAF7 MLST8 PKD1 MIR3180-5 MIR6511B1 BRICD5 CASKIN1 PGP NPW NTHL1 TBL3 NOXO1 MIR940 GFER
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA17P MIR3677 LOC106660606 ABCA3 RNPS1 MIR4717 MIR940
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain SNHG19 SNORD60 MIR3677 RAB26 AMDHD2 LOC106660606 MIR1225 RNPS1 PDPK1 ECI1 MIR4717 LOC105371049 TBC1D24 ABCA17P E4F1 ATP6V0C CEMP1 ABCA3 NTN3 MIR4516 LOC729652 DNASE1L2 C16orf59 TSC2 TRAF7 MLST8 PKD1 MIR3180-5 MIR6511B1 MIR6767 BRICD5 LOC652276 CASKIN1 CCNF PGP MIR6768 MIR3178 MIR940
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion SNHG19 TRAF7 SNORD60 MIR3677 RAB26 MLST8 LOC106660606 BRICD5 RNPS1 ECI1 MIR4717 CASKIN1 PGP E4F1 ABCA3 DNASE1L2 MIR940
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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