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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2286778 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00404592_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 22
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 22 3906 NP_001080.2
AB070929.1 19 3236 BAB86781.1
AB210044.1 21 3732 BAE06126.1
BC140895.1 19 3231
BC146866.1 19 3231
BC151840.1 22 3888
U78735.1 22 3753 AAC50967.1
X97187.1 21 3541 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LOC107984876 MAPK8IP3 SOX8 ERVK13-1 RPL23AP5 SNORD60 GNPTG MIR4516 MIR6859-4 NUBP2 LINC00235 NME4 LUC7L HBM C16orf59 CCNF CEMP1 HBQ1 PDIA2 MCRIP2 MIR6767 CCDC78 LOC729652 CHTF18 UNKL GFER PDPK1 MEIOB ARHGDIG WASIR2 CACNA1H MIR662 DDX11L10 SLC9A3R2 SPSB3 MSRB1 SNORA78 MIR3177 RNPS1 NPW SSTR5-AS1 AXIN1 WFIKKN1 LOC105371049 STUB1 TPSG1 LOC101929280 PTX4 SNHG9 NME3 RGS11 CLCN7 TSC2 RAB40C TRAF7 HBZ SNORA64 PRR35 HAGHL PRSS27 LOC652276 ABCA3 FAHD1 GNG13 MIR3178 LOC100287175 NHLRC4 SNRNP25 DNASE1L2 MIR5587 METTL26 HBA1 NARFL TELO2 RAB26 ABCA17P MIR6768 RHBDF1 NOXO1 LOC106660606 LOC105371047 RPS2 MPG CASKIN1 PRR25 DECR2 RPL3L MSLN FBXL16 JMJD8 ATP6V0C LOC105371045 MRPL28 MIR1225 MIR3677 TPSD1 HBA2 SNORA10 HS3ST6 PRSS29P HAGH C1QTNF8 IGFALS TBL3 RHOT2 FAM234A SYNGR3 NTHL1 IFT140 LOC105371184 RPUSD1 PIGQ RAB11FIP3 METRN FLJ42627 CRAMP1 CAPN15 EME2 TBC1D24 LOC107987233 TPSAB1 KCTD5 MIR6511B1 MLST8 AMDHD2 POLR3K WDR90 CCDC154 MIR4717 LOC100134368 LOC105371046 TMEM204 LMF1-AS1 LMF1 LINC00254 UBE2I C16orf91 HN1L LOC105371038 ECI1 SSTR5 MIR3176 FAM173A TMEM8A PKD1 PGP MRPS34 BAIAP3 RHBDL1 NDUFB10 RNF151 TSR3 MIR940 SNHG19 NTN3 E4F1 TPSB2 BRICD5 NPRL3 ZNF598 MIR3180-5 WDR24
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss RNPS1 NPW DNASE1L2 SNORD60 RAB26 MIR4516 LOC105371049 MIR6511B1 NOXO1 LOC106660606 MLST8 CASKIN1 MIR4717 TSC2 MIR1225 MIR3677 TRAF7 GFER ECI1 PKD1 TBL3 PGP SYNGR3 NTHL1 SLC9A3R2 MIR940 ABCA3 SNHG19 E4F1 BRICD5 ZNF598 MIR3180-5
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss RNPS1 LOC106660606 MIR3677 MIR940 ABCA3 MIR4717 ABCA17P
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain RNPS1 TBC1D24 DNASE1L2 SNORD60 RAB26 ABCA17P MIR4516 MIR6768 LOC105371049 MIR6511B1 LOC106660606 MLST8 AMDHD2 CASKIN1 C16orf59 MIR4717 CCNF ATP6V0C CEMP1 TSC2 MIR1225 MIR6767 LOC729652 MIR3677 TRAF7 PDPK1 ECI1 PKD1 PGP LOC652276 MIR940 ABCA3 SNHG19 NTN3 E4F1 MIR3178 BRICD5 MIR3180-5
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RNPS1 DNASE1L2 MIR3677 TRAF7 SNORD60 RAB26 ECI1 PGP LOC106660606 MLST8 CASKIN1 MIR940 ABCA3 MIR4717 SNHG19 E4F1 BRICD5
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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