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See other TRMT2A CNV Assays ›
Gene Symbol
TRMT2A
Assay Reference Genome
Location

Chr.22:20112961 on build GRCh38
Cytoband
22q11.21
Assay ID Hs00415780_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 27037

Gene Name:

 tRNA methyltransferase 2 homolog A

Gene Aliases:

 HTF9C

Location:

 Chr.22:20111866-20117305 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 11 - Exon 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TRMT2A NM_001257994.1 NP_001244923.1
NM_022727.5 NP_073564.3
NM_182984.4 NP_892029.2
XM_011530139.2 XP_011528441.1
XM_011530141.1 XP_011528443.1
XM_011530142.2 XP_011528444.1
XM_017028770.1 XP_016884259.1
AK025106.1 BAB15067.1
AK057029.1 BAB71349.1
BC013352.2 AAH13352.2
BC017184.2 AAH17184.2
BC108251.1 AAI08252.1
BX349507.2
CR456354.1 CAG30240.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv726n67 Chr.22:20070444 - 20324465 on Build GRCh38 Gain RTN4R MIR3618 MIR1306 CCDC188 LINC00896 DGCR6L MIR1286 RANBP1 DGCR8 TRMT2A LOC284865 ZDHHC8 MIR6816 LOC440792
esv3647284 Chr.22:19985583 - 20137122 on Build GRCh38 Gain ARVCF RANBP1 MIR185 MIR3618 DGCR8 TRMT2A MIR1306 ZDHHC8 TANGO2 MIR6816
esv3893434 Chr.22:19470889 - 20343372 on Build GRCh38 Gain ARVCF LINC00895 UFD1L RTN4R DGCR6L GNB1L C22orf29 COMT MIR1286 MIR185 DGCR8 TRMT2A LOC440792 TXNRD2 LOC101927859 MIR3618 MIR1306 CCDC188 LINC00896 SEPT5-GP1BB CDC45 RANBP1 GP1BB CLDN5 MIR4761 LOC284865 ZDHHC8 SEPT5 TANGO2 TBX1 MIR6816
esv2758825 Chr.22:20038970 - 20321924 on Build GRCh38 Loss RTN4R MIR3618 MIR1306 CCDC188 LINC00896 DGCR6L MIR1286 RANBP1 DGCR8 TRMT2A LOC284865 ZDHHC8 TANGO2 MIR6816 LOC440792
nsv828939 Chr.22:19696032 - 20324465 on Build GRCh38 Loss ARVCF RTN4R DGCR6L GNB1L C22orf29 COMT MIR1286 MIR185 DGCR8 TRMT2A LOC440792 TXNRD2 MIR3618 MIR1306 CCDC188 LINC00896 SEPT5-GP1BB RANBP1 GP1BB MIR4761 LOC284865 ZDHHC8 SEPT5 TANGO2 TBX1 MIR6816
nsv828938 Chr.22:19691069 - 20324465 on Build GRCh38 Gain ARVCF RTN4R DGCR6L GNB1L C22orf29 COMT MIR1286 MIR185 DGCR8 TRMT2A LOC440792 TXNRD2 MIR3618 MIR1306 CCDC188 LINC00896 SEPT5-GP1BB RANBP1 GP1BB MIR4761 LOC284865 ZDHHC8 SEPT5 TANGO2 TBX1 MIR6816
dgv4480n100 Chr.22:20069620 - 20262667 on Build GRCh38 Gain MIR1286 RANBP1 RTN4R MIR3618 DGCR8 TRMT2A MIR1306 CCDC188 LOC284865 ZDHHC8 LINC00896 MIR6816
nsv471183 Chr.22:20018517 - 20319470 on Build GRCh38 Loss RTN4R MIR3618 MIR1306 CCDC188 LINC00896 DGCR6L MIR1286 RANBP1 MIR185 DGCR8 TRMT2A LOC284865 ZDHHC8 TANGO2 MIR6816 LOC440792
nsv953027 Chr.22:20085378 - 20303977 on Build GRCh38 Deletion RTN4R MIR3618 MIR1306 CCDC188 LINC00896 MIR1286 RANBP1 DGCR8 TRMT2A LOC284865 ZDHHC8 MIR6816 LOC440792
nsv834133 Chr.22:20029363 - 20176708 on Build GRCh38 Loss RANBP1 MIR185 MIR3618 DGCR8 TRMT2A MIR1306 CCDC188 ZDHHC8 TANGO2 MIR6816
dgv7983n54 Chr.22:19762002 - 20321870 on Build GRCh38 Gain ARVCF TXNRD2 RTN4R MIR3618 MIR1306 CCDC188 LINC00896 DGCR6L GNB1L C22orf29 COMT MIR1286 RANBP1 MIR185 DGCR8 TRMT2A MIR4761 LOC284865 ZDHHC8 TANGO2 TBX1 MIR6816 LOC440792

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA methyltransferase

Gene Ontology Categories:

Function(s) Process(es)


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