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See other SMYD1 CNV Assays ›
Gene Symbol
SMYD1
Assay Reference Genome
Location

Chr.2:88093557 on build GRCh38
Cytoband
2p11.2
Assay ID Hs00449476_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 150572

Gene Name:

 SET and MYND domain containing 1

Gene Aliases:

 BOP, KMT3D, ZMYND18, ZMYND22

Location:

 Chr.2:88067780-88113384 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMYD1 NM_198274.3 NP_938015.1
XM_005264156.2 XP_005264213.1
AK091724.1 BAC03732.1
AL832035.1 CAI46139.1
AY518933.1 AAT44535.1
AY518934.1 AAT44536.1
BC126191.1
BX647878.1 CAI46077.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv61n16 Chr.2:87343737 - 90254660 on Build GRCh38 Deletion MIR4435-1 FOXI3 IGKV3-20 EIF2AK3 LOC101928403 RGPD2 ANKRD36BP2 IGKV2-24 SMYD1 MIR4436A TEX37 IGKC IGKV2-29 IGKV3D-15 IGKV1-5 THNSL2 IGK IGKV1D-8 PLGLB2 KRCC1 LOC101928371 IGKV2-26 LINC00152 LOC730268 LOC101927050 LOC107985911 FABP1 MIR4780 RPIA IGKV1D-13
nsv1072005 Chr.2:87360367 - 90256528 on Build GRCh38 Deletion MIR4435-1 FOXI3 IGKV3-20 EIF2AK3 LOC101928403 RGPD2 ANKRD36BP2 IGKV2-24 SMYD1 MIR4436A TEX37 IGKC IGKV2-29 IGKV3D-15 IGKV1-5 THNSL2 IGK IGKV1D-8 PLGLB2 KRCC1 LOC101928371 IGKV2-26 LINC00152 LOC730268 LOC101927050 LOC107985911 FABP1 MIR4780 RPIA IGKV1D-13
dgv6947n54 Chr.2:87815738 - 88850700 on Build GRCh38 Gain THNSL2 FOXI3 EIF2AK3 LOC101928403 RGPD2 KRCC1 ANKRD36BP2 LOC101928371 SMYD1 MIR4436A TEX37 FABP1 MIR4780 RPIA
nsv1148611 Chr.2:87360364 - 90256525 on Build GRCh38 Deletion MIR4435-1 FOXI3 IGKV3-20 EIF2AK3 LOC101928403 RGPD2 ANKRD36BP2 IGKV2-24 SMYD1 MIR4436A TEX37 IGKC IGKV2-29 IGKV3D-15 IGKV1-5 THNSL2 IGK IGKV1D-8 PLGLB2 KRCC1 LOC101928371 IGKV2-26 LINC00152 LOC730268 LOC101927050 LOC107985911 FABP1 MIR4780 RPIA IGKV1D-13
nsv834289 Chr.2:88083076 - 88251327 on Build GRCh38 Gain SMYD1 THNSL2 FABP1
nsv582384 Chr.2:87987149 - 88773214 on Build GRCh38 Loss THNSL2 FOXI3 EIF2AK3 LOC101928403 RGPD2 KRCC1 ANKRD36BP2 LOC101928371 SMYD1 TEX37 FABP1 MIR4780 RPIA
nsv582383 Chr.2:87915816 - 88527080 on Build GRCh38 Gain SMYD1 THNSL2 FOXI3 TEX37 FABP1 RGPD2 MIR4780 KRCC1
nsv582386 Chr.2:88035188 - 89208087 on Build GRCh38 Loss IGKV1-5 THNSL2 FOXI3 IGKV3-20 EIF2AK3 IGK LOC101928403 KRCC1 ANKRD36BP2 IGKV2-24 LOC101928371 SMYD1 IGKV2-26 MIR4436A TEX37 IGKC FABP1 MIR4780 RPIA

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