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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2278948 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00452958_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 29 - Exon 29
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 BAE06126.1
BC140895.1
BC146866.1
BC151840.1
U78735.1 AAC50967.1
X97187.1 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication LINC00254 IGFALS IFT140 LOC105371046 SSTR5-AS1 HN1L TPSD1 RNF151 FAHD1 CLCN7 ATP6V0C TMEM204 WDR90 LOC105371047 LMF1-AS1 CCDC78 TSR3 LOC105371038 LOC652276 MLST8 CAPN15 ERVK13-1 RAB26 HBM SNORA64 HS3ST6 MIR3677 NPW METRN SNHG19 WFIKKN1 RPS2 MIR4717 LOC100287175 STUB1 DECR2 LOC105371049 LOC105371045 NOXO1 FAM234A POLR3K PRSS27 PIGQ FLJ42627 NTN3 BRICD5 NPRL3 WDR24 KCTD5 CCDC154 RGS11 NME4 NARFL FBXL16 PGP MIR3178 CRAMP1 ZNF598 ABCA3 C1QTNF8 TRAF7 SSTR5 RPL3L LOC107984876 MAPK8IP3 PDPK1 UNKL CHTF18 HAGHL C16orf91 NTHL1 TELO2 SYNGR3 CEMP1 SOX8 HAGH DNASE1L2 CASKIN1 HBA1 MIR940 MIR6767 EME2 HBQ1 SNRNP25 MIR1225 E4F1 NUBP2 RHBDL1 AMDHD2 CCNF SLC9A3R2 BAIAP3 MIR4516 MIR662 TPSB2 MIR6859-4 NDUFB10 MIR6768 SNORA10 DDX11L10 TBC1D24 GFER LOC105371184 HBZ LOC107987233 AXIN1 MIR3177 MIR5587 HBA2 LOC101929280 LOC106660606 LINC00235 MIR3176 MCRIP2 MIR6511B1 CACNA1H MRPS34 GNG13 RAB40C TPSG1 NME3 ABCA17P PRR25 LOC729652 LMF1 MRPL28 MIR3180-5 SNHG9 SNORA78 RHBDF1 TBL3 RPUSD1 SNORD60 PKD1 JMJD8 LUC7L PRR35 RAB11FIP3 TMEM8A LOC100134368 PTX4 PDIA2 MSLN GNPTG C16orf59 TPSAB1 TSC2 MEIOB METTL26 ECI1 WASIR2 FAM173A ARHGDIG MSRB1 UBE2I PRSS29P RNPS1 SPSB3 RHOT2 NHLRC4 MPG RPL23AP5
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss NOXO1 MIR3180-5 DNASE1L2 CASKIN1 MIR940 BRICD5 TBL3 SNORD60 MIR1225 PKD1 E4F1 SLC9A3R2 MIR4516 PGP ZNF598 MLST8 ABCA3 GFER TRAF7 RAB26 TSC2 MIR3677 NPW ECI1 NTHL1 SNHG19 LOC106660606 RNPS1 MIR4717 MIR6511B1 SYNGR3 LOC105371049
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss ABCA3 LOC106660606 RNPS1 MIR4717 MIR940 MIR3677 ABCA17P
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC729652 MIR3180-5 NTN3 DNASE1L2 CASKIN1 MIR940 MIR6767 BRICD5 ATP6V0C SNORD60 MIR1225 PKD1 E4F1 AMDHD2 CCNF MIR4516 PGP MIR3178 LOC652276 MIR6768 C16orf59 MLST8 ABCA3 TBC1D24 TRAF7 RAB26 TSC2 PDPK1 MIR3677 ECI1 SNHG19 LOC106660606 RNPS1 MIR4717 MIR6511B1 LOC105371049 CEMP1 ABCA17P
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MLST8 ABCA3 DNASE1L2 TRAF7 CASKIN1 MIR940 RAB26 BRICD5 SNORD60 MIR3677 ECI1 E4F1 SNHG19 LOC106660606 RNPS1 MIR4717 PGP
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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