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See other LOC100288152 CNV Assays ›
Gene Symbol
LOC100288152
Assay Reference Genome
Location

Chr.5:479957 on build GRCh38
Cytoband
5p15.33
Assay ID Hs00468096_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 100288152

Gene Name:

 uncharacterized LOC100288152

Gene Aliases:

 -

Location:

 Chr.5:473236-480892 on Build GRCh38

Assay Gene Location:

 Within Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC100288152 NR_125375.1 6 992
AL039305.1
AL137723.1 1 1755
BG829609.1 3 230
BQ954611.1 4 513

Target Gene Details

Entrez Gene ID:

 6550

Gene Name:

 solute carrier family 9 member A3

Gene Aliases:

 DIAR8, NHE-3, NHE3

Location:

 Chr.5:471986-524434 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 9 - Exon 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SLC9A3 NM_001284351.2 NP_001271280.1
NM_004174.3 NP_004165.2
BC101669.1 AAI01670.1
BC101671.1 AAI01672.1
BC143328.1
BP270851.1
S83545.1 AAB50819.1
U28043.1 AAB48990.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv519778 Chr.5:476854 - 490122 on Build GRCh38 Loss SLC9A3 LOC100288152
esv3894107 Chr.5:81322 - 801057 on Build GRCh38 Gain LOC101929895 CCDC127 CEP72 LOC100288152 EXOC3-AS1 SDHA MIR4456 PDCD6 AHRR SLC9A3 ZDHHC11 PLEKHG4B TPPP LOC100996325 PP7080 ZDHHC11B HRAT5 EXOC3 LRRC14B
nsv822926 Chr.5:471229 - 543871 on Build GRCh38 Gain MIR4456 SLC9A3 LOC100288152 PP7080 EXOC3
nsv830183 Chr.5:349237 - 502409 on Build GRCh38 Gain+Loss AHRR SLC9A3 LOC100288152 EXOC3-AS1 PP7080 EXOC3
nsv596691 Chr.5:474296 - 492304 on Build GRCh38 Loss SLC9A3 LOC100288152
nsv1032584 Chr.5:375290 - 809679 on Build GRCh38 Gain LOC101929895 CEP72 LOC100288152 EXOC3-AS1 MIR4456 AHRR SLC9A3 ZDHHC11 TPPP LOC100996325 PP7080 ZDHHC11B EXOC3
nsv461889 Chr.5:429874 - 598109 on Build GRCh38 Gain MIR4456 AHRR SLC9A3 LOC100288152 EXOC3-AS1 PP7080 EXOC3
nsv527666 Chr.5:457146 - 490122 on Build GRCh38 Loss SLC9A3 LOC100288152 PP7080 EXOC3
dgv9479n54 Chr.5:438449 - 567131 on Build GRCh38 Gain MIR4456 SLC9A3 LOC100288152 EXOC3-AS1 PP7080 EXOC3
esv2759315 Chr.5:17263 - 595840 on Build GRCh38 Loss CCDC127 LOC100288152 EXOC3-AS1 SDHA MIR4456 PDCD6 AHRR SLC9A3 PLEKHG4B PP7080 HRAT5 EXOC3 LRRC14B
nsv521554 Chr.5:474989 - 495262 on Build GRCh38 Loss SLC9A3 LOC100288152
nsv4674 Chr.5:454921 - 488099 on Build GRCh38 Insertion SLC9A3 LOC100288152 PP7080 EXOC3
nsv1027279 Chr.5:337575 - 531110 on Build GRCh38 Gain AHRR SLC9A3 LOC100288152 EXOC3-AS1 PP7080 EXOC3
nsv1019215 Chr.5:346521 - 661696 on Build GRCh38 Gain MIR4456 AHRR SLC9A3 CEP72 LOC100288152 EXOC3-AS1 TPPP LOC100996325 PP7080 EXOC3
esv2752071 Chr.5:378298 - 699075 on Build GRCh38 Gain MIR4456 LOC101929895 AHRR SLC9A3 CEP72 LOC100288152 EXOC3-AS1 TPPP LOC100996325 PP7080 EXOC3
dgv9493n54 Chr.5:474507 - 487159 on Build GRCh38 Loss SLC9A3 LOC100288152

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More Information


Additional Information:

For this assay, SNP(s) [rs183706873] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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