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See other CABP5 CNV Assays ›
Gene Symbol
CABP5
Assay Reference Genome
Location

Chr.19:48040726 on build GRCh38
Cytoband
19q13.33
Assay ID Hs00477961_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 56344

Gene Name:

 calcium binding protein 5

Gene Aliases:

 CABP3

Location:

 Chr.19:48029383-48048342 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CABP5 NM_019855.4 NP_062829.1
XM_017026992.1 XP_016882481.1
AA318398.1
AF169159.1 AAF25793.1
BC126133.1
BC126135.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv833853 Chr.19:47982539 - 48184317 on Build GRCh38 Loss PLA2G4C PLA2G4C-AS1 ELSPBP1 C19orf68 BSPH1 CABP5 LIG1
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss CGB1 ZNF114 BAX SNAR-A9 SNAR-D NTF4 ATF5 ADM5 RUVBL2 SNAR-C3 GYS1 KCNJ14 FLJ26850 CPT1C LOC101059948 TSKS RPS11 CGB5 TEAD2 CGB8 SNAR-G1 FAM83E TBC1D17 CARD8 DKKL1 NUP62 SLC6A16 NUCB1-AS1 CARD8-AS1 SNAR-B1 SNORD33 SNAR-C1 SNAR-C2 GFY SNAR-A14 PLEKHA4 ZNF473 MED25 FUT1 EMP3 AKT1S1 MAMSTR C19orf73 SNRNP70 SNAR-A6 FCGRT CGB3 HSD17B14 CCDC155 SIGLEC11 TMEM143 LIG1 SEC1P SNAR-A10 TULP2 FGF21 FTL PNKP SNAR-C5 CYTH2 ELSPBP1 SNAR-A3 PPP1R15A SNORD32A DBP CA11 NUCB1 SNAR-A5 SYNGR4 IL4I1 SLC17A7 DHDH RCN3 RRAS PTOV1-AS1 FLT3LG PLA2G4C SNAR-B2 FUZ SNAR-A1 PTOV1-AS2 KCNA7 ALDH16A1 MIR6800 SPHK2 LMTK3 SNAR-C4 NTN5 MIR4324 FUT2 SNORD35A CCDC114 CD37 LIN7B SCAF1 VRK3 C19orf68 MIR6799 IZUMO1 LOC105372430 AP2A1 PIH1D1 SIGLEC16 PRRG2 BSPH1 SNAR-A7 CGB2 SNAR-A2 SNAR-G2 RASIP1 LHB HRC SNAR-A11 PLA2G4C-AS1 MIR4749 KDELR1 LOC101928295 PRR12 PTOV1 SULT2B1 CABP5 BCAT2 MIR6798 IRF3 SNAR-A8 SNORD35B PTH2 RPL13A LOC105447645 RPL18 SNAR-A12 PRMT1 NOSIP PPFIA3 SPACA4 GRIN2D MIR4750 SNAR-A13 SNAR-A4 CGB7 MIR150 LOC100287477 MIR4751 MIR5088 BCL2L12 SNORD34 TRPM4 GRWD1
esv34181 Chr.19:48009377 - 48416682 on Build GRCh38 Loss PLA2G4C PLA2G4C-AS1 ZNF114 KDELR1 EMP3 GRIN2D ELSPBP1 CABP5 CARD8 CCDC114 SYNGR4 CARD8-AS1 C19orf68 TMEM143 LIG1
dgv3611n100 Chr.19:48024325 - 48081406 on Build GRCh38 Gain PLA2G4C PLA2G4C-AS1 ELSPBP1 CABP5
nsv1058785 Chr.19:48004749 - 48075632 on Build GRCh38 Gain PLA2G4C PLA2G4C-AS1 ELSPBP1 CABP5
nsv1062163 Chr.19:48040339 - 48075632 on Build GRCh38 Gain PLA2G4C PLA2G4C-AS1 CABP5
esv3893228 Chr.19:48002211 - 48072851 on Build GRCh38 Loss PLA2G4C PLA2G4C-AS1 ELSPBP1 CABP5
nsv579901 Chr.19:48033582 - 48046691 on Build GRCh38 Loss CABP5
nsv1058622 Chr.19:47798576 - 48077885 on Build GRCh38 Gain PLA2G4C PLA2G4C-AS1 SNAR-A1 LINC01595 SNAR-A13 SNAR-C4 SNAR-C5 SULT2A1 ELSPBP1 TPRX1 BSPH1 CABP5 SNAR-A2 SNAR-A3 SNAR-C3 SNAR-C1 CRX SNAR-C2 SNAR-A12

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More Information


Additional Information:

For this assay, SNP(s) [rs115620220] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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