Hs00495070_cn

• Gene Symbol: PCDHB16
• Assay Reference Genome Location: Chr.5:141183870 on build GRCh38
• Cytoband: 5q31.3

Target Gene Details

• Entrez Gene ID: 57717
• Gene Name: protocadherin beta 16
• Gene Aliases: ME1, PCDH-BETA16, PCDH3X, PCDHB8a
• Location: Chr.5:141181690-141186221 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PCDHB16	NM_020957.3	1	2181	NP_066008.2
	AB046841.1	1	2472
	AF217757.1	1	1311	AAF81914.1
	AK056460.1	1	1486
	AY013878.1	1	1311	AAK21988.1
	BC036062.1	1	1460	AAH36062.1
	D88794.1			BAA21564.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2730844	Chr.5:141183869 - 141194030 on Build GRCh38	Deletion	PCDHB10 PCDHB16 PCDHB9
nsv599919	Chr.5:141182193 - 141212836 on Build GRCh38	Loss	PCDHB10 PCDHB16 PCDHB11 PCDHB12 PCDHB9
nsv5031	Chr.5:141177713 - 141202707 on Build GRCh38	Insertion	PCDHB10 PCDHB8 PCDHB16 PCDHB11 PCDHB9
nsv823266	Chr.5:141156966 - 141222863 on Build GRCh38	Gain	PCDHB14 PCDHB17P PCDHB7 PCDHB10 PCDHB8 PCDHB16 PCDHB11 PCDHB12 PCDHB9 PCDHB13
nsv1024594	Chr.5:141167591 - 141243953 on Build GRCh38	Loss	PCDHB14 PCDHB7 PCDHB10 PCDHB8 PCDHB18P PCDHB19P PCDHB16 PCDHB11 PCDHB12 PCDHB9 PCDHB13
nsv509092	Chr.5:141155922 - 141192231 on Build GRCh38	Insertion	PCDHB17P PCDHB7 PCDHB8 PCDHB16 PCDHB9
nsv471634	Chr.5:141106394 - 141258375 on Build GRCh38	Gain+Loss	PCDHB15 PCDHB14 PCDHB7 PCDHB4 PCDHB8 PCDHB18P PCDHB16 PCDHB11 PCDHB5 PCDHB12 PCDHB9 PCDHB13 PCDHB17P PCDHB6 PCDHB10 PCDHB19P
nsv428127	Chr.5:141016768 - 141319173 on Build GRCh38	Loss	PCDHB15 PCDHB14 PCDHB7 PCDHB4 PCDHB8 PCDHB18P PCDHB2 PCDHB16 PCDHB11 PCDHB5 PCDHB12 PCDHB9 PCDHB13 SLC25A2 PCDHB3 PCDHB1 PCDHB17P PCDHB6 PCDHB10 TAF7 PCDHB19P LOC101926905
dgv958e201	Chr.5:141174165 - 141215536 on Build GRCh38	Deletion	PCDHB7 PCDHB10 PCDHB8 PCDHB16 PCDHB11 PCDHB12 PCDHB9 PCDHB13
nsv599908	Chr.5:141139584 - 141250122 on Build GRCh38	Loss	PCDHB15 PCDHB14 PCDHB7 PCDHB8 PCDHB18P PCDHB16 PCDHB11 PCDHB12 PCDHB9 PCDHB13 PCDHB17P PCDHB6 PCDHB10 PCDHB19P
esv2759382	Chr.5:140777355 - 141449115 on Build GRCh38	Gain	PCDHA3 PCDHB16 PCDHAC2 PCDHA7 PCDHB12 PCDHAC1 PCDHA5 PCDHGA3 PCDHB9 SLC25A2 PCDHA6 PCDHB3 PCDHB10 PCDHGA2 PCDHB19P PCDHGA8 PCDHA8 PCDHGA5 PCDHB14 PCDHGB7 PCDHGA12 PCDHGB1 PCDHGB8P PCDHB18P PCDHA9 PCDHGA9 PCDHGB3 PCDHGA6 PCDHB11 PCDHB5 PCDHGA4 PCDHB13 PCDHB17P PCDHB6 TAF7 PCDHGB6 LOC101926905 PCDHA10 PCDHB15 PCDHGB5 PCDHGA10 PCDHGB4 PCDHA2 PCDHB7 PCDHGA7 PCDHA12 PCDHB4 PCDHB8 PCDHA4 PCDHGA11 PCDHB2 PCDHA13 PCDHA11 PCDHB1 PCDHA1 PCDHGB2 PCDHGA1
nsv499084	Chr.5:141175152 - 141193769 on Build GRCh38	Gain	PCDHB7 PCDHB10 PCDHB8 PCDHB16 PCDHB9
esv2664767	Chr.5:141177668 - 141213756 on Build GRCh38	Deletion	PCDHB10 PCDHB8 PCDHB16 PCDHB11 PCDHB12 PCDHB9

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

homophilic cell adhesion via plasma membrane adhesion molecules
chemical synaptic transmission
synapse assembly
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Function(s)

calcium ion binding