Hs00562733_cn

• Gene Symbol: GYS1
• Assay Reference Genome Location: Chr.19:48968721 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 2997
• Gene Name: glycogen synthase 1
• Gene Aliases: GSY, GYS
• Location: Chr.19:48968125-48993353 on Build GRCh38
• Assay Gene Location: Within Exon 16

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
GYS1	NM_001161587.1	15	2830	NP_001155059.1
	NM_002103.4	16	3022	NP_002094.2
	NR_027763.1	15	2840
	AK291672.1
	BC002617.2	16	2961	AAH02617.1
	BC003182.1	15	2787	AAH03182.1
	BC007688.2	16	2948	AAH07688.1
	J04501.1	16	2941	AAA88046.1
	U32573.1	16	2920	AAB60385.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	C19orf68 PPP1R15A RASIP1 ZNF114 GRIN2D HSD17B14 TRPM4 SEC1P LMTK3 ZNF473 BAX EMP3 SNAR-A3 TMEM143 RUVBL2 SNAR-A8 SNAR-C1 SNAR-B1 FUZ LOC105447645 GFY PPFIA3 SLC6A16 HRC MIR6798 MIR6800 TSKS FLT3LG SNAR-C2 NTN5 DKKL1 NTF4 FUT2 SYNGR4 KCNA7 FCGRT NUCB1-AS1 BCAT2 SNORD35A SNAR-A11 CGB1 CA11 BCL2L12 GRWD1 PTOV1-AS2 PRMT1 ATF5 SNRNP70 SNAR-A1 FGF21 CARD8 TEAD2 SNAR-A2 MIR150 SNAR-A7 BSPH1 DHDH CCDC114 CYTH2 ELSPBP1 SNORD32A TBC1D17 LOC101059948 SCAF1 C19orf73 FAM83E LIG1 SNAR-G1 PRR12 SNAR-B2 SNAR-A10 IL4I1 SNAR-A5 CGB5 FTL CGB2 LOC101928295 CPT1C LHB SNORD33 NUP62 PLA2G4C PLA2G4C-AS1 SNAR-A4 PTOV1-AS1 AKT1S1 CD37 NUCB1 ADM5 LOC100287477 SNAR-A9 MIR4750 CGB7 SNAR-G2 SNAR-D RCN3 SIGLEC16 SNAR-A14 SNORD34 LIN7B PTOV1 DBP RRAS GYS1 SNAR-A13 MIR5088 SNAR-A12 SPACA4 MED25 PRRG2 FUT1 SNAR-C3 IZUMO1 MIR4749 MAMSTR CCDC155 PLEKHA4 SULT2B1 MIR4324 SNAR-A6 VRK3 MIR6799 MIR4751 SNAR-C5 NOSIP KDELR1 CGB8 PNKP AP2A1 ALDH16A1 CGB3 PTH2 IRF3 TULP2 LOC105372430 CARD8-AS1 SPHK2 SIGLEC11 RPS11 SNAR-C4 RPL13A SNORD35B RPL18 FLJ26850 SLC17A7 CABP5 PIH1D1 KCNJ14
dgv3618n100	Chr.19:48948950 - 49021211 on Build GRCh38	Gain	MIR6798 RUVBL2 LOC101059948 GYS1 LHB BAX FTL
nsv833857	Chr.19:48914476 - 49146320 on Build GRCh38	Loss	CGB1 SNAR-G1 CGB3 SNRNP70 PPFIA3 NUCB1 GYS1 BAX CGB7 CGB5 FTL DHDH MIR6798 CGB8 CGB2 SNAR-G2 RUVBL2 NTF4 LOC101059948 KCNA7 C19orf73 NUCB1-AS1 LHB LIN7B
nsv953598	Chr.19:48957644 - 49085143 on Build GRCh38	Deletion	CGB1 SNAR-G1 CGB3 SNRNP70 GYS1 BAX CGB7 CGB5 FTL MIR6798 CGB8 CGB2 SNAR-G2 RUVBL2 NTF4 LOC101059948 KCNA7 LHB
nsv833856	Chr.19:48847866 - 48986483 on Build GRCh38	Loss	DHDH PPP1R15A PLEKHA4 NUCB1 TULP2 NUCB1-AS1 GYS1 BAX FTL

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

glycogen biosynthetic process
heart development

Function(s)

glycogen (starch) synthase activity
protein binding
glucose binding
protein kinase binding
glycogen synthase activity, transferring glucose-1-phosphate