Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2220 | NP_067051.2 |
| XM_005259122.4 | 7 | 2503 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2145 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 1947 | XP_016882572.1 | |
| AK024444.1 | 7 | 2220 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 2107 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 RRAS
NOSIP
CPT1C
ADM5
PRMT1
PRR12
PRRG2
MIR5088
IRF3
SCAF1
BCL2L12
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
RRAS
NOSIP
CPT1C
ADM5
PRMT1
PRR12
PRRG2
MIR5088
IRF3
SCAF1
BCL2L12
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-A5
FLT3LG
EMP3
MIR4324
BAX
RPS11
SNAR-A3
FGF21
C19orf73
CPT1C
PLA2G4C-AS1
KCNA7
MIR6800
SNORD33
PPP1R15A
SLC17A7
BCAT2
CGB2
ADM5
CYTH2
FUT1
AKT1S1
GRIN2D
MIR5088
LOC101928295
NTN5
SNAR-A6
SNAR-C5
CD37
NOSIP
NUCB1-AS1
SNORD32A
MIR6798
MED25
RUVBL2
ALDH16A1
IRF3
DBP
PLEKHA4
SNAR-A1
CARD8
MIR4749
SYNGR4
MIR4750
CGB1
SPHK2
SNAR-B2
SIGLEC16
NTF4
CABP5
ZNF473
TBC1D17
SNORD35B
SIGLEC11
PRMT1
MIR4751
DHDH
TMEM143
CCDC114
PTOV1-AS2
SNAR-A2
SNORD35A
CGB5
CGB3
SCAF1
SNAR-D
LOC101059948
TULP2
PRRG2
SNAR-A12
FUT2
RASIP1
GYS1
SNAR-A11
SNAR-A13
SNAR-B1
BSPH1
FUZ
LIN7B
NUP62
TEAD2
SNAR-A7
SPACA4
KDELR1
SULT2B1
HRC
PIH1D1
C19orf68
PLA2G4C
SNAR-A10
SNAR-C1
RPL18
MAMSTR
IL4I1
VRK3
SNAR-A8
PPFIA3
GFY
SNAR-A14
SNAR-C4
DKKL1
TRPM4
FLJ26850
PTOV1-AS1
PNKP
LMTK3
FAM83E
CCDC155
KCNJ14
FCGRT
CARD8-AS1
CGB8
FTL
SEC1P
LHB
LOC100287477
MIR6799
CGB7
SNAR-C3
NUCB1
LOC105372430
IZUMO1
RPL13A
ELSPBP1
ATF5
MIR150
SNRNP70
SNAR-C2
PRR12
LIG1
HSD17B14
SNAR-G2
ZNF114
TSKS
SNAR-A9
BCL2L12
RRAS
PTOV1
SNAR-G1
SNAR-A4
AP2A1
GRWD1
RCN3
SLC6A16
CA11
PTH2
SNORD34
LOC105447645
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
PRMT1
FUZ
PRR12
PTOV1-AS2
MED25
TSKS
IRF3
SCAF1
BCL2L12
MIR4749
MIR6799
RRAS
PTOV1
AP2A1
CPT1C
ADM5
PTOV1-AS1
MIR5088
MIR6800
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
RRAS
NOSIP
CPT1C
ADM5
PRMT1
PRR12
PRRG2
MIR5088
IRF3
SCAF1
BCL2L12
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
NOSIP
FUZ
NUP62
MED25
IRF3
MIR4749
MIR6799
CPT1C
MIR4750
IL4I1
TBC1D17
MIR6800
ATF5
PRMT1
MIR4751
PRR12
PTOV1-AS2
TSKS
SCAF1
BCL2L12
RRAS
PTOV1
AP2A1
ADM5
PTOV1-AS1
PRRG2
AKT1S1
PNKP
MIR5088
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
FCGRT
NOSIP
FUZ
SNORD32A
MED25
IRF3
RPS11
MIR6799
CPT1C
RPL13A
SNORD35B
MIR6800
MIR150
PRMT1
SNORD33
PRR12
SNORD35A
TSKS
SCAF1
BCL2L12
RRAS
AP2A1
ADM5
PTOV1-AS1
RCN3
PRRG2
SNORD34
MIR5088
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
RRAS
NOSIP
PRMT1
PRR12
PRRG2
IRF3
SCAF1
BCL2L12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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