Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2220 | NP_067051.2 |
| XM_005259122.4 | 7 | 2503 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2145 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 1947 | XP_016882572.1 | |
| AK024444.1 | 7 | 2220 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 2107 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 SCAF1
ADM5
PRRG2
PRR12
NOSIP
PRMT1
RRAS
CPT1C
BCL2L12
MIR5088
IRF3
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
SCAF1
ADM5
PRRG2
PRR12
NOSIP
PRMT1
RRAS
CPT1C
BCL2L12
MIR5088
IRF3
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-B2
CGB5
PPFIA3
AKT1S1
GRIN2D
TBC1D17
DHDH
PRR12
LOC101059948
MIR4750
CABP5
IL4I1
SNORD33
SIGLEC16
CCDC155
TULP2
SNAR-A11
LOC101928295
SNAR-G1
SEC1P
LOC105372430
MIR6800
C19orf68
ADM5
SNORD35B
SNORD32A
LHB
DBP
PPP1R15A
PTOV1-AS2
FLT3LG
MIR150
PLA2G4C
SNAR-A1
LOC100287477
SNAR-D
PNKP
SLC17A7
SNAR-C4
SULT2B1
LOC105447645
MIR4324
KCNA7
BCAT2
SNAR-A13
SNAR-C1
MAMSTR
ZNF473
ZNF114
KDELR1
MIR4751
SNAR-A9
C19orf73
NTF4
MED25
PTH2
MIR4749
CYTH2
PLEKHA4
SNAR-A2
LMTK3
LIG1
RPL18
BCL2L12
SCAF1
TMEM143
SNAR-A10
SNAR-C5
SNAR-A5
BAX
MIR6799
CGB8
RPL13A
NUCB1
CGB3
FTL
SNAR-B1
FUT1
FCGRT
SNORD35A
SNRNP70
CA11
SYNGR4
BSPH1
CPT1C
ATF5
MIR5088
IRF3
FUZ
FAM83E
DKKL1
FGF21
MIR6798
LIN7B
SLC6A16
CGB2
RRAS
SNAR-C3
SPACA4
HSD17B14
GYS1
SNAR-A3
CD37
CARD8
IZUMO1
SNAR-A6
SNAR-A8
GFY
RASIP1
SNAR-A7
KCNJ14
SNAR-C2
AP2A1
GRWD1
SPHK2
SNAR-A14
SIGLEC11
RUVBL2
HRC
TRPM4
PRMT1
ELSPBP1
RCN3
TEAD2
RPS11
ALDH16A1
PTOV1-AS1
SNAR-G2
CCDC114
CGB7
SNAR-A12
EMP3
PLA2G4C-AS1
SNAR-A4
TSKS
NUP62
CGB1
NUCB1-AS1
PIH1D1
SNORD34
PTOV1
PRRG2
FLJ26850
NOSIP
FUT2
NTN5
CARD8-AS1
VRK3
|
| nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain |
SCAF1
ADM5
PRR12
PRMT1
RRAS
CPT1C
BCL2L12
MIR5088
IRF3
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PNKP
AKT1S1
TBC1D17
PRR12
MIR4750
PRMT1
CPT1C
ATF5
MIR5088
IL4I1
IRF3
FUZ
MIR4751
PTOV1-AS1
MED25
RRAS
MIR4749
MIR6800
ADM5
TSKS
NUP62
BCL2L12
PTOV1-AS2
SCAF1
PTOV1
PRRG2
MIR6799
NOSIP
AP2A1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
SCAF1
ADM5
PRRG2
PRR12
NOSIP
PRMT1
RRAS
CPT1C
BCL2L12
MIR5088
IRF3
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
FCGRT
SNORD35A
PRR12
PRMT1
CPT1C
MIR5088
IRF3
SNORD33
FUZ
RCN3
RPS11
PTOV1-AS1
MED25
RRAS
MIR6800
ADM5
SNORD35B
SNORD32A
TSKS
BCL2L12
SCAF1
SNORD34
PRRG2
MIR150
MIR6799
NOSIP
RPL13A
AP2A1
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
SCAF1
PRRG2
PRR12
NOSIP
PRMT1
RRAS
BCL2L12
IRF3
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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