Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2648 | NP_067051.2 |
| XM_005259122.4 | 7 | 2931 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2573 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2375 | XP_016882572.1 | |
| AK024444.1 | 7 | 2648 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 39 | AAH18398.1 | |
| BC053992.1 | 6 | 2535 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 RRAS
ADM5
MIR5088
PRRG2
SCAF1
PRMT1
PRR12
CPT1C
IRF3
NOSIP
BCL2L12
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
RRAS
ADM5
MIR5088
PRRG2
SCAF1
PRMT1
PRR12
CPT1C
IRF3
NOSIP
BCL2L12
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
IZUMO1
PLA2G4C
SNAR-C3
SNORD32A
ATF5
SNORD34
CARD8
RPL13A
PLEKHA4
MED25
SNAR-C2
SNAR-G2
CGB1
LOC101059948
MIR6800
SNAR-A11
MIR4750
SNAR-A1
PTOV1-AS1
GRIN2D
ADM5
SNAR-A9
CARD8-AS1
LMTK3
RRAS
TMEM143
RUVBL2
SLC17A7
RPS11
SNAR-A7
SNAR-A13
FUT1
CD37
DKKL1
RPL18
SNAR-A5
SNAR-A4
SLC6A16
FLT3LG
ELSPBP1
SNAR-B1
KDELR1
NUP62
PNKP
SNAR-A8
TSKS
NTF4
SNAR-D
PIH1D1
SNAR-C5
MIR6798
KCNA7
CGB3
TEAD2
SPACA4
SNAR-A6
SNAR-A10
PTOV1-AS2
SNAR-G1
CGB7
FLJ26850
CGB8
LOC101928295
LIN7B
CPT1C
SIGLEC11
CYTH2
FUZ
MIR6799
GYS1
FGF21
FAM83E
SIGLEC16
SNAR-B2
ZNF473
C19orf73
DBP
IRF3
TULP2
PPP1R15A
PPFIA3
RCN3
SEC1P
C19orf68
GRWD1
CABP5
FTL
SNAR-A2
PLA2G4C-AS1
SULT2B1
IL4I1
CGB5
VRK3
SNAR-C4
SPHK2
BCAT2
LOC105372430
LHB
ALDH16A1
SNORD33
SNAR-C1
PRRG2
SNORD35B
LOC100287477
MIR4324
PTH2
BCL2L12
CGB2
NUCB1-AS1
NUCB1
TBC1D17
BSPH1
LOC105447645
EMP3
PRMT1
CCDC155
GFY
ZNF114
HRC
FUT2
MIR150
SNAR-A12
MAMSTR
DHDH
SYNGR4
SNORD35A
HSD17B14
SNAR-A14
FCGRT
SNRNP70
SCAF1
MIR4751
TRPM4
NTN5
KCNJ14
MIR5088
AKT1S1
SNAR-A3
PTOV1
BAX
MIR4749
PRR12
CA11
LIG1
NOSIP
AP2A1
RASIP1
CCDC114
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
RRAS
MIR6800
SCAF1
PRMT1
IRF3
PTOV1-AS1
ADM5
MIR5088
PTOV1-AS2
PTOV1
MIR4749
PRR12
CPT1C
AP2A1
FUZ
MIR6799
MED25
TSKS
BCL2L12
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
RRAS
ADM5
MIR5088
PRRG2
SCAF1
PRMT1
PRR12
CPT1C
IRF3
NOSIP
BCL2L12
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
RRAS
TBC1D17
PRMT1
IRF3
ATF5
NUP62
PNKP
MED25
TSKS
MIR6800
SCAF1
MIR4750
MIR4751
IL4I1
PTOV1-AS1
ADM5
MIR5088
AKT1S1
PTOV1-AS2
PTOV1
PRRG2
MIR4749
PRR12
CPT1C
NOSIP
AP2A1
FUZ
MIR6799
BCL2L12
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
RRAS
PRMT1
RPS11
IRF3
SNORD32A
RCN3
MIR150
SNORD34
RPL13A
SNORD35A
MED25
TSKS
FCGRT
MIR6800
SCAF1
PTOV1-AS1
ADM5
SNORD33
MIR5088
PRRG2
SNORD35B
PRR12
CPT1C
NOSIP
AP2A1
FUZ
MIR6799
BCL2L12
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
RRAS
PRRG2
SCAF1
PRMT1
PRR12
IRF3
NOSIP
BCL2L12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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