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See other MAPK8IP3 CNV Assays ›
Gene Symbol
MAPK8IP3
Assay Reference Genome
Location

Chr.16:1706420 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00593499_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 23162

Gene Name:

 mitogen-activated protein kinase 8 interacting protein 3

Gene Aliases:

 JIP-3, JIP3, JSAP1, SYD2, syd

Location:

 Chr.16:1706183-1770317 on Build GRCh38

Assay Gene Location:

 Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
MAPK8IP3 NM_001040439.1 1 201 NP_001035529.1
NM_001318852.1 1 238 NP_001305781.1
NM_015133.4 1 238 NP_055948.2
XM_005255190.2 1 238 XP_005255247.1
XM_006720869.2 XP_006720932.1
XM_011522429.2 1 238 XP_011520731.1
XM_011522430.2 1 238 XP_011520732.1
XM_011522431.2 1 238 XP_011520733.1
XM_011522432.2 1 238 XP_011520734.1
XM_017023079.1 1 238 XP_016878568.1
XM_017023080.1 1 238 XP_016878569.1
AB028989.2 1 201
AB621811.1 1 226
AK024437.1 1 180 BAB15727.1
BC137123.1 1 153
BC137124.1 1 153
BC144486.1 1 153
BC150266.1 1 201
BY795428.2
CN405914.1 1 230
CR749696.1 CAH18476.1
DA135446.1 1 238

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4856n54 Chr.16:1600945 - 1813519 on Build GRCh38 Loss CRAMP1 EME2 NUBP2 HAGH LOC105371046 IGFALS MIR3177 NME3 HN1L MRPS34 MAPK8IP3 SPSB3 IFT140
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication NTHL1 WFIKKN1 JMJD8 CRAMP1 PGP STUB1 PRR35 SOX8 ZNF598 NME3 ERVK13-1 RAB26 NARFL RNF151 MAPK8IP3 PRR25 C16orf91 LINC00235 FBXL16 NOXO1 LOC105371045 NUBP2 LOC101929280 HAGH RAB40C LUC7L E4F1 BRICD5 MPG HBA2 LMF1 MIR4717 TRAF7 WDR90 DNASE1L2 LOC652276 KCTD5 SLC9A3R2 UBE2I PKD1 CHTF18 MIR4516 MSRB1 DECR2 MIR3677 LOC107987233 SSTR5 FAM173A C1QTNF8 SPSB3 IFT140 LOC100287175 SNORA64 PDPK1 LMF1-AS1 NDUFB10 TSC2 RHBDF1 LOC100134368 ARHGDIG NTN3 SSTR5-AS1 LOC105371046 TPSB2 TBL3 AXIN1 PRSS29P LINC00254 MRPS34 NHLRC4 MIR6511B1 SNORD60 CCDC154 SYNGR3 BAIAP3 RPL23AP5 GFER ECI1 SNORA78 RNPS1 METTL26 HBM PTX4 TPSAB1 MIR6768 LOC106660606 SNRNP25 RPUSD1 LOC105371049 RPL3L GNPTG RPS2 TPSG1 MIR6859-4 CLCN7 NME4 PRSS27 PIGQ FAM234A EME2 C16orf59 RHOT2 MEIOB HN1L SNHG9 DDX11L10 TBC1D24 FAHD1 WDR24 MIR662 CCDC78 LOC105371047 MIR3176 CAPN15 HBQ1 HAGHL IGFALS UNKL FLJ42627 RAB11FIP3 POLR3K TSR3 LOC105371038 MCRIP2 SNHG19 MSLN AMDHD2 TMEM204 CEMP1 WASIR2 MIR1225 RGS11 PDIA2 MIR3178 TELO2 MIR5587 LOC105371184 TPSD1 LOC729652 CACNA1H HS3ST6 LOC107984876 ABCA3 ABCA17P MIR3177 NPRL3 MIR940 TMEM8A ATP6V0C MRPL28 MLST8 NPW MIR3180-5 RHBDL1 CCNF HBZ GNG13 MIR6767 CASKIN1 SNORA10 HBA1 METRN
nsv1051692 Chr.16:1505070 - 1866102 on Build GRCh38 Loss LOC105371047 CRAMP1 EME2 NUBP2 HAGH LOC105371046 IGFALS MIR3177 NME3 MEIOB HN1L MRPS34 TMEM204 MAPK8IP3 FAHD1 SPSB3 IFT140 TELO2
nsv1160328 Chr.16:1704619 - 1797867 on Build GRCh38 Deletion MRPS34 EME2 NUBP2 MAPK8IP3 IGFALS SPSB3 MIR3177 NME3
nsv833118 Chr.16:1550716 - 1711581 on Build GRCh38 Loss TMEM204 CRAMP1 MAPK8IP3 LOC105371046 IFT140 HN1L
nsv518641 Chr.16:1645775 - 1835631 on Build GRCh38 Loss CRAMP1 EME2 NUBP2 HAGH IGFALS MIR3177 NME3 MEIOB HN1L MRPS34 MAPK8IP3 FAHD1 SPSB3

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More Information


Additional Information:

For this assay, SNP(s) [rs201073807] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)


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