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See other TTLL10 CNV Assays ›
Gene Symbol
TTLL10
Assay Reference Genome
Location

Chr.1:1180124 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00688721_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 254173

Gene Name:

 tubulin tyrosine ligase like 10

Gene Aliases:

 TTLL5

Location:

 Chr.1:1173709-1197936 on Build GRCh38

Assay Gene Location:

 Within Exon 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TTLL10 NM_001130045.1 6 441 NP_001123517.1
NM_153254.2 2 248 NP_694986.2
XM_005244738.1 2 275 XP_005244795.1
XM_011541177.2 6 518 XP_011539479.1
XM_017000906.1 2 519 XP_016856395.1
XM_017000907.1 3 600 XP_016856396.1
XM_017000908.1 3 600 XP_016856397.1
XM_017000909.1 3 600 XP_016856398.1
XM_017000910.1 3 600 XP_016856399.1
XM_017000911.1 3 600 XP_016856400.1
XM_017000912.1 4 372 XP_016856401.1
AK093438.1 2 248 BAC04164.1
AK124125.1 6 441 BAC85781.1
BC126152.1 2 215
BC126154.1 2 215

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC105378591 TTLL10 GABRD CDK11B FAM41C MIR6859-2 CALML6 C1orf159 LOC105378592 MMP23B LOC729737 TMEM52 FNDC10 FAM138A OR4F5 ACAP3 MIR6723 ATAD3B LOC102725121 LOC107985728 LOC148413 LOC100129534 DDX11L1 MIR200A LOC100288069 MTND1P23 AURKAIP1 LOC100132287 ATAD3C LOC102724312 MIR200B LOC100506504 CFAP74 LOC107985729 MTND2P28 PRKCZ KLHL17 LINC01128 CPSF3L LOC100133331 MIR429 ANKRD65 B3GALT6 LOC105378949 MIR6727 TNFRSF4 LINC00115 LOC100130417 LINC01342 WASH7P MMP23A SSU72 PLEKHN1 CPTP TTLL10-AS1 SLC35E2 CDK11A GNB1 CCNL2 NOC2L TNFRSF18 MIR6808 LOC107984841 SLC35E2B NADK LOC101928626 FAAP20 LOC284600 AGRN LOC100287934 SCNN1D OR4F16 OR4F29 RNF223 VWA1 TMEM88B ATAD3A FAM132A MIR6726 FAM87B MXRA8 MIR6859-1 DVL1 MORN1 MRPL20 HES4 UBE2J2 MIR1302-2 LOC105378589 SAMD11 LOC105378947 SKI ISG15 LOC100134822 MIB2 SDF4 TAS1R3 LOC100288175 LOC105378948 TMEM240 PERM1 PUSL1
nsv544954 Chr.1:1139244 - 1186414 on Build GRCh38 Loss MIR200B MIR200A MIR429 LINC01342 TTLL10-AS1 TTLL10
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain C1orf159 MIR200A MIR429 TTLL10-AS1 B3GALT6 TTLL10 FAM132A TNFRSF4 SCNN1D MIR200B LINC01342 TNFRSF18 SDF4 RNF223 UBE2J2 LOC105378948
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss C1orf159 MIR200A MIR429 TTLL10-AS1 B3GALT6 TTLL10 FAM132A MIR6726 TNFRSF4 SCNN1D MIR200B ACAP3 LINC01342 TNFRSF18 SDF4 RNF223 UBE2J2
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 B3GALT6 TTLL10 SDF4 TNFRSF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PLEKHN1 MIR200A TTLL10-AS1 TTLL10 MIR200B FAM41C NOC2L TNFRSF18 HES4 KLHL17 C1orf159 MIR429 LOC284600 AGRN SAMD11 TNFRSF4 ISG15 LOC100130417 LINC01342 LOC107985728 SDF4 RNF223 LOC100288175 LOC105378948 PERM1
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication CPTP MIR200A TTLL10-AS1 TTLL10 FAM132A MIR6726 MIR200B TNFRSF18 UBE2J2 CPSF3L C1orf159 MIR429 B3GALT6 AGRN MIR6727 TNFRSF4 SCNN1D ACAP3 LINC01342 SDF4 RNF223 TAS1R3 LOC100288175 LOC105378948 PUSL1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SSU72 PLEKHN1 CPTP TTLL10-AS1 SLC35E2 CDK11A TTLL10 CCNL2 CDK11B FAM41C NOC2L TNFRSF18 MIR6808 SLC35E2B NADK C1orf159 MMP23B LOC284600 AGRN LOC100287934 FNDC10 SCNN1D ACAP3 ATAD3B LOC107985728 RNF223 VWA1 LOC148413 TMEM88B ATAD3A MIR200A LOC100288069 AURKAIP1 FAM132A ATAD3C MIR6726 LOC102724312 FAM87B MIR200B MXRA8 LOC107985729 DVL1 MRPL20 HES4 UBE2J2 KLHL17 LINC01128 CPSF3L MIR429 ANKRD65 B3GALT6 MIR6727 SAMD11 TNFRSF4 LINC00115 ISG15 LOC100130417 LINC01342 MIB2 SDF4 MMP23A TAS1R3 LOC100288175 LOC105378948 TMEM240 PERM1 PUSL1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PLEKHN1 MIR200A TTLL10-AS1 TTLL10 FAM132A FAM87B MIR200B FAM41C NOC2L TNFRSF18 HES4 UBE2J2 KLHL17 LINC01128 C1orf159 MIR429 LOC284600 B3GALT6 AGRN SAMD11 TNFRSF4 LINC00115 ISG15 LOC100130417 LINC01342 LOC107985728 SDF4 RNF223 LOC100288175 LOC105378948 PERM1
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion TMEM88B SSU72 ATAD3A CPTP MIR200A TTLL10-AS1 AURKAIP1 TTLL10 FAM132A ATAD3C MIR6726 LOC102724312 CCNL2 MIR200B CDK11B MXRA8 LOC107985729 TNFRSF18 MIR6808 DVL1 MRPL20 UBE2J2 CPSF3L C1orf159 MIR429 MMP23B ANKRD65 B3GALT6 MIR6727 FNDC10 TNFRSF4 SCNN1D ACAP3 ATAD3B LINC01342 MIB2 SDF4 TAS1R3 VWA1 TMEM240 PUSL1 LOC148413
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TMEM88B PLEKHN1 CPTP MIR200A TTLL10-AS1 AURKAIP1 TTLL10 FAM132A MIR6726 CCNL2 MIR200B NOC2L MXRA8 TNFRSF18 MIR6808 DVL1 MRPL20 HES4 UBE2J2 KLHL17 CPSF3L C1orf159 MIR429 LOC284600 ANKRD65 B3GALT6 AGRN MIR6727 SAMD11 TNFRSF4 SCNN1D ISG15 ACAP3 LOC100130417 LINC01342 LOC107985728 SDF4 RNF223 TAS1R3 LOC100288175 LOC105378948 PERM1 PUSL1 LOC148413
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 C1orf159 MIR200A MIR429 TTLL10-AS1 AGRN TTLL10 SAMD11 TNFRSF4 ISG15 MIR200B NOC2L LINC01342 TNFRSF18 SDF4 RNF223 HES4 KLHL17 LOC100288175 LOC105378948 PERM1
nsv509257 Chr.1:1151955 - 1189470 on Build GRCh38 Insertion MIR200B MIR200A MIR429 TTLL10-AS1 TTLL10
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200A MIR429 TTLL10-AS1 B3GALT6 MIR6727 TTLL10 FAM132A MIR6726 TNFRSF4 SCNN1D MIR200B ACAP3 TNFRSF18 SDF4 UBE2J2 CPSF3L PUSL1

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More Information


Additional Information:

For this assay, SNP(s) [rs111751804] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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