Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 844 | NP_067051.2 |
| XM_005259122.4 | 7 | 1127 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 769 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 571 | XP_016882572.1 | |
| AK024444.1 | 7 | 844 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 731 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 IRF3
ADM5
SCAF1
CPT1C
NOSIP
PRR12
RRAS
MIR5088
PRMT1
PRRG2
BCL2L12
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
IRF3
ADM5
SCAF1
CPT1C
NOSIP
PRR12
RRAS
MIR5088
PRMT1
PRRG2
BCL2L12
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
DHDH
RCN3
SNAR-A5
MIR6798
CPT1C
FCGRT
SNORD35A
CARD8
SNAR-A6
SNORD32A
PIH1D1
GYS1
TRPM4
MIR4751
SPACA4
ZNF473
PTOV1
GRIN2D
PPFIA3
MAMSTR
SNAR-G1
SNAR-A8
SULT2B1
CABP5
SNAR-B1
NTF4
RRAS
CGB1
SPHK2
FUZ
SNAR-A2
ADM5
BSPH1
ELSPBP1
SNAR-C4
LOC105372430
RPL13A
SNAR-C5
PTOV1-AS2
BCL2L12
IRF3
PPP1R15A
SEC1P
PNKP
SNAR-B2
MIR5088
SNAR-A11
SYNGR4
CGB7
SNAR-C1
ZNF114
SNAR-A12
KCNA7
IZUMO1
MIR6800
CGB3
RPL18
SNAR-G2
DBP
FLJ26850
CCDC155
NTN5
EMP3
CARD8-AS1
SNAR-C2
HSD17B14
BCAT2
C19orf73
PTOV1-AS1
C19orf68
SNAR-A13
MIR4750
FGF21
CGB5
SNAR-A10
TEAD2
CYTH2
SIGLEC16
MIR4749
PLEKHA4
SNAR-A7
FUT1
TSKS
LOC105447645
PRR12
FUT2
SNORD34
NUP62
NUCB1-AS1
LMTK3
SLC6A16
FTL
LIN7B
SNORD35B
SNAR-A4
PLA2G4C
SIGLEC11
SLC17A7
BAX
TMEM143
AKT1S1
CA11
SNAR-C3
LHB
KCNJ14
PRRG2
DKKL1
SCAF1
SNAR-A9
KDELR1
PLA2G4C-AS1
TBC1D17
CGB2
RPS11
LIG1
CGB8
NOSIP
HRC
PTH2
RASIP1
ALDH16A1
SNAR-A3
MED25
NUCB1
SNAR-A1
RUVBL2
TULP2
FLT3LG
GRWD1
ATF5
FAM83E
CCDC114
IL4I1
SNORD33
MIR4324
VRK3
SNAR-A14
GFY
MIR6799
PRMT1
SNRNP70
LOC101059948
MIR150
LOC101928295
LOC100287477
AP2A1
CD37
SNAR-D
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
IRF3
SCAF1
TSKS
MED25
CPT1C
PRR12
RRAS
MIR5088
MIR6799
PRMT1
FUZ
PTOV1-AS1
ADM5
MIR6800
AP2A1
PTOV1
MIR4749
PTOV1-AS2
BCL2L12
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
IRF3
ADM5
SCAF1
CPT1C
NOSIP
PRR12
RRAS
MIR5088
PRMT1
PRRG2
BCL2L12
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
IRF3
TSKS
MED25
PNKP
CPT1C
PRR12
MIR5088
NUP62
MIR4751
MIR6800
PTOV1
AKT1S1
ATF5
PRRG2
IL4I1
SCAF1
RRAS
MIR6799
PRMT1
TBC1D17
FUZ
PTOV1-AS1
ADM5
MIR4750
NOSIP
AP2A1
MIR4749
PTOV1-AS2
BCL2L12
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
IRF3
SCAF1
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
IRF3
RCN3
TSKS
MED25
CPT1C
FCGRT
PRR12
SNORD35A
SNORD34
MIR5088
SNORD32A
SNORD35B
MIR6800
PRRG2
SNORD33
SCAF1
RRAS
MIR6799
PRMT1
FUZ
PTOV1-AS1
MIR150
ADM5
RPS11
NOSIP
AP2A1
RPL13A
BCL2L12
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
IRF3
SCAF1
NOSIP
PRR12
RRAS
PRMT1
PRRG2
BCL2L12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
IRF3
SCAF1
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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