Hs00715771_cn

• Gene Symbol: CABP5
• Assay Reference Genome Location: Chr.19:48041638 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 56344
• Gene Name: calcium binding protein 5
• Gene Aliases: CABP3
• Location: Chr.19:48029383-48048342 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CABP5	NM_019855.4			NP_062829.1
	XM_017026992.1			XP_016882481.1
	AA318398.1
	AF169159.1			AAF25793.1
	BC126133.1
	BC126135.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833853	Chr.19:47982539 - 48184317 on Build GRCh38	Loss	BSPH1 PLA2G4C CABP5 PLA2G4C-AS1 C19orf68 ELSPBP1 LIG1
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	SPACA4 SLC6A16 DKKL1 PTH2 SNAR-A10 NUP62 IL4I1 CD37 SNAR-G2 C19orf68 TMEM143 FTL C19orf73 SNAR-A2 TBC1D17 SLC17A7 SNAR-A11 CARD8-AS1 SNORD33 SEC1P KCNJ14 SNAR-C5 SPHK2 SNAR-C3 SNORD35B TSKS PTOV1-AS2 LOC105372430 SNAR-A9 ADM5 AKT1S1 SNAR-A13 KDELR1 GRIN2D PTOV1-AS1 DBP MIR4751 LOC101059948 CGB5 TEAD2 PPP1R15A ALDH16A1 BCL2L12 MIR6798 LHB FUT2 NTN5 BSPH1 SNORD32A SNAR-C1 NOSIP EMP3 SNAR-G1 PIH1D1 FLJ26850 RPL13A ATF5 CYTH2 NTF4 CGB7 MIR5088 SNAR-B2 VRK3 SNAR-A3 PLA2G4C RPS11 RCN3 TRPM4 FLT3LG PNKP AP2A1 KCNA7 MED25 MIR6800 SNAR-A7 PLEKHA4 SNAR-A8 NUCB1-AS1 PPFIA3 SNAR-B1 CCDC114 HSD17B14 SNAR-A1 SNAR-D SNAR-A5 LIG1 FUT1 RPL18 CGB3 LOC101928295 MAMSTR RASIP1 SYNGR4 SNAR-A12 FAM83E SNRNP70 PRMT1 CCDC155 SNORD34 MIR4749 PTOV1 CA11 GRWD1 MIR150 LOC100287477 SNAR-A4 PRR12 BCAT2 DHDH CPT1C LMTK3 LOC105447645 IRF3 ZNF473 RUVBL2 GFY CABP5 FCGRT MIR6799 CGB2 PLA2G4C-AS1 MIR4324 SNORD35A ELSPBP1 CGB1 SNAR-A14 MIR4750 LIN7B SCAF1 SIGLEC16 RRAS CGB8 PRRG2 CARD8 ZNF114 TULP2 GYS1 SULT2B1 SNAR-C4 HRC IZUMO1 BAX SNAR-C2 FUZ NUCB1 FGF21 SIGLEC11 SNAR-A6
dgv3610n100	Chr.19:48024325 - 48062810 on Build GRCh38	Gain	PLA2G4C CABP5 PLA2G4C-AS1 ELSPBP1
esv34181	Chr.19:48009377 - 48416682 on Build GRCh38	Loss	ZNF114 PLA2G4C CABP5 SYNGR4 PLA2G4C-AS1 ELSPBP1 CARD8-AS1 KDELR1 GRIN2D EMP3 CCDC114 C19orf68 TMEM143 CARD8 LIG1
nsv1062163	Chr.19:48040339 - 48075632 on Build GRCh38	Gain	PLA2G4C CABP5 PLA2G4C-AS1
nsv1058785	Chr.19:48004749 - 48075632 on Build GRCh38	Gain	PLA2G4C CABP5 PLA2G4C-AS1 ELSPBP1
esv3893228	Chr.19:48002211 - 48072851 on Build GRCh38	Loss	PLA2G4C CABP5 PLA2G4C-AS1 ELSPBP1
nsv579901	Chr.19:48033582 - 48046691 on Build GRCh38	Loss	CABP5
nsv1058622	Chr.19:47798576 - 48077885 on Build GRCh38	Gain	SNAR-A3 SNAR-C4 PLA2G4C SNAR-C3 CABP5 SNAR-A2 SNAR-A12 SNAR-C2 PLA2G4C-AS1 ELSPBP1 SULT2A1 SNAR-A13 LINC01595 BSPH1 SNAR-C1 TPRX1 SNAR-A1 CRX SNAR-C5

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

signal transduction

Function(s)

calcium ion binding
protein binding