Hs00795946_cn

• Gene Symbol: PLPPR3
• Assay Reference Genome Location: Chr.19:814493 on build GRCh38
• Cytoband: 19p13.3

Target Gene Details

• Entrez Gene ID: 79948
• Gene Name: phospholipid phosphatase related 3
• Gene Aliases: LPPR3, LPR3, PRG-2, PRG2
• Location: Chr.19:812488-824244 on Build GRCh38
• Assay Gene Location: Within Exon 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PLPPR3	NM_001270366.1	7	836	NP_001257295.1
	NM_024888.2	6	920	NP_079164.1
	XM_011528317.2	6	1512	XP_011526619.1
	AF357888.1	6	1183	AAO85401.1
	AF541282.1	6	920	AAP57771.1
	AK021597.1	2	167	BAB13851.1
	AL136596.1	6	920	CAB66531.1
	AY304517.1	6	920	AAP72154.1
	AY436785.1	7	835	AAR10818.1
	BC012339.1	4	428	AAH12339.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv134n111	Chr.19:607984 - 967584 on Build GRCh38	Deletion	PALM PRSS57 RNF126 PLPPR3 MIR4745 CFD FGF22 ELANE RNU6-9 AZU1 KISS1R HCN2 FSTL3 POLRMT R3HDM4 MIR3187 PRTN3 ARID3A MED16 MISP LOC101928450 PTBP1
nsv578172	Chr.19:811414 - 841398 on Build GRCh38	Loss	AZU1 PLPPR3 MIR3187 PRTN3 PTBP1
nsv828354	Chr.19:796933 - 815173 on Build GRCh38	Gain	PLPPR3 MIR3187 MIR4745 PTBP1
nsv458321	Chr.19:797079 - 850574 on Build GRCh38	Loss	AZU1 PLPPR3 MIR3187 MIR4745 PRTN3 PTBP1
nsv953938	Chr.19:355801 - 1104501 on Build GRCh38	Deletion	PALM TPGS1 WDR18 PLPPR3 POLR2E MIR4745 CFD ELANE LOC105372235 AZU1 SHC2 TMEM259 HCN2 FSTL3 POLRMT R3HDM4 MIR3187 ARID3A MED16 MISP RNU6-2 PRSS57 C2CD4C RNF126 CNN2 FGF22 BSG CDC34 MADCAM1 GRIN3B GZMM THEG RNU6-9 KISS1R GPX4 ABCA7 PRTN3 ARHGAP45 LOC101928450 ODF3L2 PTBP1
nsv470101	Chr.19:401714 - 1008505 on Build GRCh38	Loss	PALM TPGS1 WDR18 PLPPR3 MIR4745 CFD ELANE LOC105372235 AZU1 SHC2 HCN2 FSTL3 POLRMT R3HDM4 MIR3187 ARID3A MED16 MISP PRSS57 C2CD4C RNF126 FGF22 BSG CDC34 MADCAM1 GRIN3B GZMM RNU6-9 KISS1R PRTN3 LOC101928450 ODF3L2 PTBP1

More Information

Additional Information:

For this assay, SNP(s) [rs76900321] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

phosphatase

Gene Ontology Categories:

Process(es)

phospholipid metabolic process
signal transduction
phospholipid dephosphorylation

Function(s)

phosphatidate phosphatase activity
lipid phosphatase activity