Hs00841952_cn

• Gene Symbol: CABP5
• Assay Reference Genome Location: Chr.19:48030567 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 56344
• Gene Name: calcium binding protein 5
• Gene Aliases: CABP3
• Location: Chr.19:48029383-48048342 on Build GRCh38
• Assay Gene Location: Overlaps Intron 7 - Exon 8

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CABP5	NM_019855.4			NP_062829.1
	XM_017026992.1			XP_016882481.1
	AF169159.1			AAF25793.1
	BC126133.1
	BC126135.1
	BQ185108.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv833853	Chr.19:47982539 - 48184317 on Build GRCh38	Loss	PLA2G4C PLA2G4C-AS1 BSPH1 C19orf68 ELSPBP1 CABP5 LIG1
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	TBC1D17 PNKP PTH2 SNAR-A11 DKKL1 PPP1R15A FUT1 CGB3 ZNF473 SNAR-G2 MIR4324 LOC101059948 PIH1D1 LOC105372430 MIR4750 SLC6A16 PTOV1 RRAS SNAR-A10 GRIN2D LOC100287477 SNRNP70 PTOV1-AS1 LOC105447645 PRR12 RCN3 MED25 SNORD32A PLEKHA4 SNORD34 SNAR-A3 SNAR-A6 TMEM143 FUT2 PRMT1 SNAR-G1 TRPM4 SNAR-C3 SPACA4 TSKS LOC101928295 ZNF114 ELSPBP1 MAMSTR SNAR-A1 SNAR-A13 SNAR-A5 SNAR-A14 GYS1 MIR4751 CD37 BCL2L12 EMP3 GRWD1 KCNJ14 CCDC155 NUP62 IL4I1 FTL AP2A1 BSPH1 CARD8 NUCB1 MIR6799 FCGRT TULP2 SNAR-C4 CYTH2 PPFIA3 SCAF1 CGB5 MIR150 DHDH IRF3 SNAR-A7 MIR4749 SULT2B1 FLJ26850 CGB2 NTF4 CPT1C SNORD33 SNAR-A4 FUZ KCNA7 PRRG2 ATF5 SYNGR4 MIR5088 HSD17B14 BAX MIR6800 SNAR-A8 CABP5 FAM83E CGB7 NOSIP SEC1P RUVBL2 SNAR-B1 IZUMO1 SNORD35B LMTK3 SNAR-C1 GFY CGB8 CA11 NTN5 SNAR-B2 RASIP1 CCDC114 DBP SNORD35A SNAR-A12 PLA2G4C KDELR1 C19orf73 RPL18 SNAR-A9 RPS11 ALDH16A1 SNAR-D HRC SIGLEC11 TEAD2 FLT3LG LHB CARD8-AS1 NUCB1-AS1 SIGLEC16 FGF21 SLC17A7 LIN7B SNAR-C2 MIR6798 PLA2G4C-AS1 RPL13A C19orf68 SNAR-A2 PTOV1-AS2 ADM5 BCAT2 SPHK2 SNAR-C5 VRK3 AKT1S1 CGB1 LIG1
esv34181	Chr.19:48009377 - 48416682 on Build GRCh38	Loss	TMEM143 GRIN2D SYNGR4 EMP3 CABP5 CCDC114 PLA2G4C KDELR1 PLA2G4C-AS1 CARD8 C19orf68 ZNF114 ELSPBP1 CARD8-AS1 LIG1
dgv3611n100	Chr.19:48024325 - 48081406 on Build GRCh38	Gain	PLA2G4C PLA2G4C-AS1 ELSPBP1 CABP5
nsv1058785	Chr.19:48004749 - 48075632 on Build GRCh38	Gain	PLA2G4C PLA2G4C-AS1 ELSPBP1 CABP5
nsv428367	Chr.19:47788899 - 48039659 on Build GRCh38	Gain+Loss	SNAR-A3 SNAR-C1 LINC01595 CRX SNAR-C2 SNAR-C3 CABP5 SNAR-A12 BSPH1 SNAR-A2 ELSPBP1 SULT2A1 SNAR-A1 SNAR-C5 SNAR-A13 TPRX1 SNAR-C4
nsv579900	Chr.19:48019612 - 48033524 on Build GRCh38	Loss	ELSPBP1 CABP5
esv3893228	Chr.19:48002211 - 48072851 on Build GRCh38	Loss	PLA2G4C PLA2G4C-AS1 ELSPBP1 CABP5
dgv3612n100	Chr.19:48027173 - 48037765 on Build GRCh38	Gain	CABP5
nsv1058622	Chr.19:47798576 - 48077885 on Build GRCh38	Gain	SNAR-A3 SNAR-C1 LINC01595 CRX SNAR-C2 SNAR-C3 CABP5 SNAR-A12 PLA2G4C PLA2G4C-AS1 BSPH1 SNAR-A2 ELSPBP1 SULT2A1 SNAR-A1 SNAR-C5 SNAR-A13 TPRX1 SNAR-C4

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

signal transduction

Function(s)

calcium ion binding
protein binding