Hs00856550_cn

• Gene Symbol: SSNA1
• Assay Reference Genome Location: Chr.9:137188764 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 8636
• Gene Name: SS nuclear autoantigen 1
• Gene Aliases: N14, NA-14, NA14
• Location: Chr.9:137188602-137190370 on Build GRCh38
• Assay Gene Location: Overlaps Exon 1 - Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSNA1	NM_003731.2			NP_003722.2
	BC000864.1			AAH00864.1
	BT006766.1			AAP35412.1
	CR542238.1			CAG47034.1
	DB466912.1
	Z96932.1			CAB09660.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv616007	Chr.9:137079368 - 137240666 on Build GRCh38	Loss	UAP1L1 NDOR1 GRIN1 TMEM203 TMEM210 MAN1B1-AS1 SSNA1 MIR3621 LRRC26 DPP7 LOC101930307 CYSRT1 TPRN ANAPC2 RNF208 SLC34A3 MAN1B1 RNF224
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	TUBB4B NDOR1 TOR4A TMEM203 NELFB EXD3 SSNA1 FAM166A STPG3 C9orf173-AS1 CYSRT1 TPRN ANAPC2 RNF208 SLC34A3 NRARP RNF224
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	ENTPD8 GRIN1 C9orf142 PTGDS PNPLA7 TPRN CCDC183 FUT7 MAMDC4 UAP1L1 NPDC1 ABCA2 NELFB EXD3 MIR7114 SSNA1 FAM166A STPG3 C9orf173-AS1 C9orf139 DPP7 NSMF C8G MAN1B1 MIR4292 NDOR1 ENTPD2 TMEM203 C9orf172 LCNL1 CLIC3 MIR3621 EDF1 LRRC26 CCDC183-AS1 MIR4479 SAPCD2 RNF208 RABL6 PHPT1 NRARP RNF224 TUBB4B TOR4A TMEM210 NOXA1 LCN12 MAN1B1-AS1 PRR31 LOC101930307 CYSRT1 ANAPC2 FBXW5 SLC34A3 TRAF2
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	TUBB4B NDOR1 TOR4A GRIN1 TMEM203 TMEM210 NELFB EXD3 SSNA1 FAM166A STPG3 C9orf173-AS1 MIR3621 LRRC26 CYSRT1 TPRN ANAPC2 RNF208 SLC34A3 NRARP RNF224
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	UAP1L1 NPDC1 ENTPD2 GRIN1 TMEM210 MAN1B1-AS1 SSNA1 MIR3621 LRRC26 C9orf139 DPP7 LOC101930307 SAPCD2 ANAPC2 FUT7 MAN1B1
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	TUBB4B NDOR1 TOR4A ENTPD8 GRIN1 TMEM203 TMEM210 NOXA1 NELFB EXD3 SSNA1 FAM166A STPG3 C9orf173-AS1 MIR3621 LRRC26 CYSRT1 TPRN ANAPC2 RNF208 SLC34A3 NRARP RNF224
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	GRIN1 FAM69B C9orf142 EGFL7 PTGDS LCN8 SNORA17B TPRN CCDC183 FUT7 LCN15 AGPAT2 MAMDC4 UAP1L1 NPDC1 ABCA2 NELFB EXD3 SSNA1 FAM166A STPG3 C9orf173-AS1 C9orf139 DPP7 C8G MAN1B1 LINC01451 MIR4292 NDOR1 ENTPD2 TMEM203 MIR6722 C9orf172 LCNL1 CLIC3 MIR126 MIR3621 EDF1 LRRC26 CCDC183-AS1 MIR4479 LCN6 SAPCD2 RNF208 RABL6 LOC100128593 PHPT1 SNHG7 NRARP RNF224 TUBB4B TOR4A TMEM141 TMEM210 LCN12 MAN1B1-AS1 HSPC324 PRR31 LOC101930307 CYSRT1 SNORA17A LCN10 ANAPC2 FBXW5 SLC34A3 TRAF2

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

G2/M transition of mitotic cell cycle
intraciliary transport
ciliary receptor clustering involved in smoothened signaling pathway

Function(s)

protein binding
identical protein binding