Hs00856550_cn

• Gene Symbol: SSNA1
• Assay Reference Genome Location: Chr.9:137188764 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 8636
• Gene Name: SS nuclear autoantigen 1
• Gene Aliases: N14, NA-14, NA14
• Location: Chr.9:137188602-137190370 on Build GRCh38
• Assay Gene Location: Overlaps Exon 1 - Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SSNA1	NM_003731.2			NP_003722.2
	BC000864.1			AAH00864.1
	BT006766.1			AAP35412.1
	CR542238.1			CAG47034.1
	DB466912.1
	Z96932.1			CAB09660.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv616007	Chr.9:137079368 - 137240666 on Build GRCh38	Loss	MIR3621 SSNA1 LOC101930307 LRRC26 MAN1B1-AS1 NDOR1 RNF208 SLC34A3 ANAPC2 UAP1L1 GRIN1 TMEM210 RNF224 TMEM203 DPP7 TPRN CYSRT1 MAN1B1
dgv13009n54	Chr.9:137173890 - 137327859 on Build GRCh38	Loss	SSNA1 NDOR1 TUBB4B RNF208 NRARP NELFB FAM166A EXD3 SLC34A3 ANAPC2 C9orf173-AS1 STPG3 RNF224 TMEM203 TOR4A TPRN CYSRT1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	TRAF2 LOC101930307 LRRC26 RNF208 CCDC183 UAP1L1 PTGDS GRIN1 ABCA2 MIR7114 TMEM203 DPP7 C9orf139 MIR3621 C9orf142 PRR31 MIR4292 ENTPD8 NDOR1 LCN12 NELFB C8G SLC34A3 NPDC1 STPG3 CCDC183-AS1 C9orf172 TOR4A NOXA1 MAN1B1 ENTPD2 MAMDC4 NRARP LCNL1 FAM166A FUT7 EXD3 RABL6 ANAPC2 C9orf173-AS1 TMEM210 MIR4479 CLIC3 TPRN NSMF CYSRT1 SSNA1 EDF1 PNPLA7 MAN1B1-AS1 TUBB4B PHPT1 FBXW5 RNF224 SAPCD2
nsv951207	Chr.9:137136949 - 137379148 on Build GRCh38	Deletion	MIR3621 SSNA1 LRRC26 NDOR1 TUBB4B RNF208 NRARP NELFB FAM166A EXD3 SLC34A3 ANAPC2 GRIN1 C9orf173-AS1 STPG3 TMEM210 RNF224 TMEM203 TOR4A TPRN CYSRT1
nsv1161918	Chr.9:137118319 - 137438026 on Build GRCh38	Duplication	MIR3621 SSNA1 LRRC26 ENTPD8 NDOR1 TUBB4B RNF208 NRARP NELFB FAM166A EXD3 SLC34A3 ANAPC2 GRIN1 C9orf173-AS1 STPG3 TMEM210 RNF224 TMEM203 TOR4A TPRN NOXA1 CYSRT1
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	MIR3621 SSNA1 LOC101930307 LRRC26 MAN1B1-AS1 FUT7 ANAPC2 UAP1L1 NPDC1 GRIN1 TMEM210 DPP7 C9orf139 SAPCD2 MAN1B1 ENTPD2
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	TRAF2 LOC101930307 LRRC26 RNF208 SNORA17B LCN6 CCDC183 UAP1L1 PTGDS MIR126 GRIN1 ABCA2 TMEM203 DPP7 HSPC324 C9orf139 MIR3621 C9orf142 PRR31 MIR4292 LINC01451 NDOR1 LCN12 NELFB LCN10 C8G SLC34A3 TMEM141 NPDC1 STPG3 CCDC183-AS1 C9orf172 TOR4A MAN1B1 ENTPD2 MAMDC4 NRARP LCNL1 FAM69B FAM166A FUT7 EXD3 RABL6 ANAPC2 C9orf173-AS1 SNHG7 LOC100128593 TMEM210 MIR4479 CLIC3 LCN15 AGPAT2 TPRN CYSRT1 SNORA17A SSNA1 EDF1 MAN1B1-AS1 TUBB4B LCN8 PHPT1 FBXW5 RNF224 EGFL7 SAPCD2 MIR6722

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

G2/M transition of mitotic cell cycle
intraciliary transport
ciliary receptor clustering involved in smoothened signaling pathway

Function(s)

protein binding
identical protein binding