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See other TTLL10 CNV Assays ›
Gene Symbol
TTLL10
Assay Reference Genome
Location

Chr.1:1181792 on build GRCh38
Cytoband
1p36.33
Assay ID Hs00898780_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 254173

Gene Name:

 tubulin tyrosine ligase like 10

Gene Aliases:

 TTLL5

Location:

 Chr.1:1173709-1197936 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 9 - Intron 10
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TTLL10 NM_001130045.1 NP_001123517.1
NM_153254.2 NP_694986.2
XM_005244738.1 XP_005244795.1
XM_011541177.2 XP_011539479.1
XM_017000906.1 XP_016856395.1
XM_017000907.1 XP_016856396.1
XM_017000908.1 XP_016856397.1
XM_017000909.1 XP_016856398.1
XM_017000910.1 XP_016856399.1
XM_017000911.1 XP_016856400.1
XM_017000912.1 XP_016856401.1
AK093438.1 BAC04164.1
AK124125.1 BAC85781.1
BC126152.1
BC126154.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MMP23B NOC2L TMEM240 AURKAIP1 GNB1 CCNL2 TMEM88B LOC100506504 LOC284600 LINC00115 UBE2J2 TNFRSF18 TNFRSF4 FAM138A LOC105378589 RNF223 B3GALT6 MIR429 SSU72 PRKCZ LOC100288175 CPTP MMP23A MIR6723 OR4F16 LOC101928626 ISG15 MIR6726 WASH7P CDK11A LOC100288069 CFAP74 LOC100132287 SKI SDF4 TMEM52 SLC35E2B MORN1 FAM132A MIR200A ATAD3C LOC100133331 DVL1 LOC100134822 DDX11L1 LOC105378949 MIR6808 LOC148413 LOC100129534 LOC729737 MIR6859-2 MTND2P28 LOC105378947 MIR6727 LOC107985729 PUSL1 AGRN MXRA8 LOC107984841 CALML6 CPSF3L FAM87B MIR6859-1 LOC102725121 HES4 LOC102724312 TAS1R3 OR4F5 ATAD3B SLC35E2 LOC100287934 PLEKHN1 FAM41C SAMD11 LINC01342 TTLL10 KLHL17 MIB2 FAAP20 SCNN1D LOC105378592 LINC01128 OR4F29 ACAP3 VWA1 LOC105378948 NADK LOC100130417 MIR1302-2 CDK11B FNDC10 MTND1P23 LOC105378591 PERM1 C1orf159 TTLL10-AS1 MRPL20 ANKRD65 ATAD3A MIR200B GABRD LOC107985728
nsv544954 Chr.1:1139244 - 1186414 on Build GRCh38 Loss LINC01342 TTLL10 TTLL10-AS1 MIR429 MIR200A MIR200B
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 TTLL10 SDF4 RNF223 C1orf159 TTLL10-AS1 SCNN1D B3GALT6 MIR429 FAM132A MIR200A MIR200B UBE2J2 LOC105378948 TNFRSF18 TNFRSF4
nsv544947 Chr.1:1070426 - 1306704 on Build GRCh38 Loss LINC01342 TTLL10 SDF4 MIR6726 RNF223 C1orf159 TTLL10-AS1 SCNN1D B3GALT6 MIR429 FAM132A MIR200A MIR200B ACAP3 UBE2J2 TNFRSF18 TNFRSF4
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 SDF4 TTLL10-AS1 TNFRSF18 B3GALT6 TNFRSF4
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LINC01342 ISG15 TTLL10 NOC2L KLHL17 LOC284600 AGRN LOC105378948 TNFRSF18 LOC100130417 TNFRSF4 PERM1 SDF4 RNF223 C1orf159 TTLL10-AS1 MIR429 MIR200A MIR200B HES4 LOC100288175 PLEKHN1 FAM41C LOC107985728 SAMD11
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LINC01342 TTLL10 MIR6726 SCNN1D MIR6727 ACAP3 PUSL1 AGRN UBE2J2 LOC105378948 TNFRSF18 TNFRSF4 CPSF3L SDF4 RNF223 C1orf159 TTLL10-AS1 B3GALT6 MIR429 FAM132A MIR200A MIR200B TAS1R3 LOC100288175 CPTP
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss MMP23B NOC2L TMEM240 AURKAIP1 MIR6727 LOC107985729 CCNL2 TMEM88B LOC284600 PUSL1 LINC00115 AGRN UBE2J2 TNFRSF18 MXRA8 TNFRSF4 CPSF3L FAM87B RNF223 B3GALT6 MIR429 SSU72 HES4 LOC102724312 TAS1R3 ATAD3B LOC100288175 CPTP SLC35E2 LOC100287934 PLEKHN1 MMP23A FAM41C SAMD11 LINC01342 ISG15 TTLL10 KLHL17 MIB2 MIR6726 SCNN1D LINC01128 ACAP3 CDK11A LOC100288069 VWA1 LOC105378948 NADK LOC100130417 CDK11B FNDC10 PERM1 SDF4 C1orf159 TTLL10-AS1 MRPL20 SLC35E2B ANKRD65 ATAD3A FAM132A MIR200A MIR200B ATAD3C DVL1 MIR6808 LOC148413 LOC107985728
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC01342 ISG15 TTLL10 NOC2L KLHL17 LINC01128 LOC284600 LINC00115 AGRN UBE2J2 LOC105378948 TNFRSF18 LOC100130417 TNFRSF4 PERM1 SDF4 FAM87B RNF223 C1orf159 TTLL10-AS1 B3GALT6 MIR429 FAM132A MIR200A MIR200B HES4 LOC100288175 PLEKHN1 FAM41C LOC107985728 SAMD11
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion LINC01342 MMP23B TTLL10 MIB2 MIR6726 TMEM240 SCNN1D AURKAIP1 MIR6727 LOC107985729 CCNL2 TMEM88B ACAP3 PUSL1 VWA1 UBE2J2 TNFRSF18 MXRA8 TNFRSF4 CDK11B FNDC10 CPSF3L SDF4 C1orf159 TTLL10-AS1 MRPL20 ANKRD65 B3GALT6 MIR429 ATAD3A FAM132A MIR200A MIR200B ATAD3C SSU72 LOC102724312 DVL1 TAS1R3 ATAD3B MIR6808 CPTP LOC148413
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LINC01342 ISG15 TTLL10 NOC2L KLHL17 MIR6726 SCNN1D AURKAIP1 MIR6727 CCNL2 TMEM88B ACAP3 LOC284600 PUSL1 AGRN UBE2J2 LOC105378948 TNFRSF18 LOC100130417 MXRA8 TNFRSF4 CPSF3L PERM1 SDF4 RNF223 C1orf159 TTLL10-AS1 MRPL20 ANKRD65 B3GALT6 MIR429 FAM132A MIR200A MIR200B HES4 DVL1 TAS1R3 LOC100288175 MIR6808 CPTP PLEKHN1 LOC148413 LOC107985728 SAMD11
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion LINC01342 ISG15 TTLL10 PERM1 NOC2L SDF4 KLHL17 RNF223 C1orf159 TTLL10-AS1 MIR429 MIR200A MIR200B HES4 LOC100288175 AGRN PLEKHN1 LOC105378948 TNFRSF18 TNFRSF4 SAMD11
nsv509257 Chr.1:1151955 - 1189470 on Build GRCh38 Insertion TTLL10 TTLL10-AS1 MIR429 MIR200A MIR200B
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain CPSF3L TTLL10 SDF4 MIR6726 TTLL10-AS1 SCNN1D MIR6727 B3GALT6 MIR429 FAM132A MIR200A MIR200B ACAP3 PUSL1 UBE2J2 TNFRSF18 TNFRSF4

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More Information


Additional Information:

For this assay, SNP(s) [rs200289943] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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