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See other LOC105371049 CNV Assays ›
Gene Symbol
LOC105371049
Assay Reference Genome
Location

Chr.16:2092550 on build GRCh38
Cytoband
16p13.3
Assay ID Hs00938420_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 105371049

Gene Name:

 uncharacterized LOC105371049

Gene Aliases:

 -

Location:

 Chr.16:2091436-2095017 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LOC105371049 NR_135175.1
BM824397.1

Target Gene Details

Entrez Gene ID:

 5310

Gene Name:

 polycystin 1, transient receptor potential channel interacting

Gene Aliases:

 PBP, Pc-1, TRPP1

Location:

 Chr.16:2088708-2135898 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 43 - Exon 44
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
PKD1 NM_000296.3 NP_000287.3
NM_001009944.2 NP_001009944.2
XM_005255370.3 XP_005255427.1
XM_011522528.2 XP_011520830.1
XM_011522529.2 XP_011520831.1
XM_011522530.2 XP_011520832.1
XM_011522532.2 XP_011520834.1
XM_011522534.2 XP_011520836.1
XM_011522535.2 XP_011520837.1
XM_011522537.2 XP_011520839.1
XM_017023285.1 XP_016878774.1
AB209025.1 BAD92262.1
AB209675.1 BAD92912.1
L33243.1 AAC37576.1
U24497.1 AAC50128.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv4862n54 Chr.16:2088868 - 2095128 on Build GRCh38 Loss LOC105371049 PKD1 MIR1225
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication PRSS27 JMJD8 C16orf91 RPL23AP5 HAGH RPS2 NOXO1 LOC105371047 NTN3 MSLN FAM173A SNORA78 TPSG1 FBXL16 LINC00254 UBE2I ZNF598 SNHG19 NPW BAIAP3 PIGQ MIR5587 NHLRC4 IGFALS LOC101929280 HBA2 MIR3677 LOC105371046 RAB26 SSTR5-AS1 TPSD1 LOC105371184 MEIOB METTL26 PDPK1 ATP6V0C DECR2 SNRNP25 MLST8 CCDC154 RNPS1 LOC729652 PTX4 TPSB2 HS3ST6 LOC106660606 ARHGDIG CRAMP1 SSTR5 MIR3177 E4F1 NDUFB10 EME2 LOC107987233 CACNA1H BRICD5 WASIR2 NME4 NUBP2 AMDHD2 LOC100287175 TBC1D24 FLJ42627 ABCA17P WFIKKN1 DNASE1L2 RGS11 GNPTG CEMP1 NME3 HBQ1 LUC7L MAPK8IP3 TBL3 WDR90 STUB1 RHBDF1 LINC00235 LMF1-AS1 HBZ MSRB1 FAM234A RPL3L RPUSD1 MIR6511B1 MPG PRSS29P METRN HAGHL ABCA3 GFER RNF151 NTHL1 LMF1 SNORD60 KCTD5 MIR3178 SNORA64 SYNGR3 ERVK13-1 LOC107984876 MIR3180-5 CLCN7 HBA1 TMEM204 MIR940 MRPL28 MIR3176 GNG13 PRR35 TRAF7 TELO2 CCNF POLR3K FAHD1 IFT140 WDR24 SNHG9 NPRL3 SPSB3 RHBDL1 PDIA2 RHOT2 MIR6768 MIR4717 MRPS34 PRR25 CASKIN1 C16orf59 CAPN15 LOC652276 PGP LOC105371038 SNORA10 SLC9A3R2 DDX11L10 HBM AXIN1 UNKL MIR6859-4 MCRIP2 CCDC78 LOC100134368 MIR1225 NARFL TMEM8A SOX8 LOC105371045 HN1L C1QTNF8 TPSAB1 CHTF18 MIR662 TSR3 RAB11FIP3 LOC105371049 TSC2 RAB40C ECI1 MIR4516 PKD1 MIR6767
dgv4859n54 Chr.16:1971892 - 2264400 on Build GRCh38 Loss MLST8 RNPS1 MIR6511B1 NOXO1 CASKIN1 E4F1 ZNF598 PGP BRICD5 SLC9A3R2 SNHG19 GFER NPW MIR1225 NTHL1 SNORD60 SYNGR3 DNASE1L2 MIR3180-5 LOC105371049 TSC2 RAB26 ECI1 MIR4516 TRAF7 PKD1 TBL3
nsv952901 Chr.16:1888800 - 2135899 on Build GRCh38 Deletion NTHL1 SNHG9 HS3ST6 MSRB1 RPL3L SNORA64 MIR6511B1 SYNGR3 RPS2 NOXO1 SNORA78 NDUFB10 LOC105371049 ZNF598 TSC2 SNORA10 SLC9A3R2 GFER NPW MIR4516 PKD1 TBL3 RNF151 MIR1225
nsv1160329 Chr.16:1961727 - 2128574 on Build GRCh38 Deletion NTHL1 SNHG9 SNORA64 MIR6511B1 SYNGR3 RPS2 NOXO1 SNORA78 NDUFB10 LOC105371049 ZNF598 TSC2 SNORA10 SLC9A3R2 GFER NPW PKD1 TBL3 RNF151 MIR1225
dgv4861n54 Chr.16:2083900 - 2246850 on Build GRCh38 Loss MLST8 SNORD60 MIR6511B1 DNASE1L2 MIR3180-5 CASKIN1 E4F1 LOC105371049 PGP TSC2 BRICD5 SNHG19 RAB26 ECI1 MIR4516 TRAF7 PKD1 MIR1225
nsv571190 Chr.16:2055054 - 2200730 on Build GRCh38 Loss CASKIN1 LOC105371049 TSC2 SNORD60 SNHG19 RAB26 MIR6511B1 MIR4516 TRAF7 PKD1 MIR3180-5 MIR1225
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain CCNF MLST8 RNPS1 LOC729652 LOC106660606 MIR6511B1 MIR6768 MIR4717 NTN3 CASKIN1 C16orf59 E4F1 LOC652276 PGP BRICD5 ABCA3 SNHG19 AMDHD2 TBC1D24 MIR1225 ABCA17P SNORD60 MIR3178 DNASE1L2 MIR3180-5 MIR940 LOC105371049 CEMP1 TSC2 MIR3677 RAB26 ECI1 MIR4516 TRAF7 PKD1 PDPK1 ATP6V0C MIR6767
nsv471381 Chr.16:2088710 - 2135898 on Build GRCh38 Gain LOC105371049 TSC2 MIR6511B1 MIR4516 PKD1 MIR1225
esv26918 Chr.16:2091142 - 2123135 on Build GRCh38 Gain+Loss LOC105371049 MIR6511B1 PKD1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Function(s) Process(es)


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