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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49645140 on build GRCh38
Cytoband
19q13.33
Assay ID Hs00977860_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 4 - Intron 4
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss ADM5 RRAS PRMT1 IRF3 PRRG2 BCL2L12 SCAF1 CPT1C NOSIP PRR12 MIR5088
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss ADM5 RRAS PRMT1 IRF3 PRRG2 BCL2L12 SCAF1 CPT1C NOSIP PRR12 MIR5088
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss MIR4751 ATF5 SNAR-C3 LIG1 AKT1S1 LMTK3 PNKP ELSPBP1 SEC1P SNAR-A4 CGB5 KDELR1 CCDC155 SPACA4 EMP3 RPL13A RRAS SPHK2 SNAR-A10 FGF21 SNAR-A5 CGB2 DBP AP2A1 RASIP1 FUT1 LOC100287477 CABP5 TULP2 PTOV1 MAMSTR SNAR-C1 RUVBL2 BSPH1 MIR4324 FUT2 CCDC114 PRRG2 CD37 SNRNP70 DKKL1 TBC1D17 RPL18 FCGRT SNORD32A PTOV1-AS2 CPT1C GFY SNORD33 PIH1D1 SYNGR4 SNAR-A7 SNAR-A9 CYTH2 SNORD35A SNORD35B SIGLEC11 IL4I1 NUP62 SNAR-A14 ALDH16A1 PRR12 MIR4749 BAX ZNF114 KCNJ14 SNAR-C4 LHB DHDH NUCB1 PTH2 SNAR-G2 SULT2B1 SNAR-G1 ADM5 SNAR-C5 PLA2G4C BCAT2 NUCB1-AS1 CARD8-AS1 PTOV1-AS1 NOSIP TRPM4 MIR4750 TEAD2 SNAR-A3 VRK3 SNAR-B2 PLA2G4C-AS1 MIR6798 GYS1 IRF3 SNAR-A12 SNAR-A6 GRWD1 ZNF473 MIR150 SLC17A7 FUZ FTL IZUMO1 GRIN2D FLJ26850 SNAR-A8 SLC6A16 LIN7B SNAR-B1 C19orf73 CGB3 NTN5 LOC101928295 FAM83E BCL2L12 RPS11 TMEM143 NTF4 SNAR-A2 MIR6800 LOC105372430 SNAR-C2 CGB7 FLT3LG PRMT1 HSD17B14 RCN3 SNAR-A11 KCNA7 CGB8 PPFIA3 LOC105447645 MIR5088 MED25 HRC LOC101059948 PLEKHA4 TSKS SCAF1 PPP1R15A MIR6799 CGB1 CA11 SNORD34 SNAR-D CARD8 SIGLEC16 SNAR-A13 C19orf68 SNAR-A1
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain MED25 ADM5 PTOV1 FUZ TSKS MIR6800 SCAF1 PTOV1-AS1 MIR6799 RRAS PRMT1 IRF3 BCL2L12 PTOV1-AS2 CPT1C AP2A1 PRR12 MIR4749 MIR5088
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain ADM5 RRAS PRMT1 IRF3 PRRG2 BCL2L12 SCAF1 CPT1C NOSIP PRR12 MIR5088
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion ADM5 MIR4751 ATF5 AKT1S1 PNKP MIR6800 PTOV1-AS1 NOSIP MIR4750 RRAS PRMT1 IRF3 IL4I1 NUP62 AP2A1 PRR12 MIR4749 MIR5088 MED25 PTOV1 FUZ PRRG2 TSKS SCAF1 MIR6799 TBC1D17 BCL2L12 PTOV1-AS2 CPT1C
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD33 ADM5 MIR6800 PTOV1-AS1 NOSIP RPL13A RRAS PRMT1 SNORD35A RCN3 IRF3 SNORD35B AP2A1 MIR150 PRR12 MIR5088 MED25 FUZ PRRG2 TSKS SCAF1 MIR6799 SNORD34 FCGRT SNORD32A BCL2L12 RPS11 CPT1C
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss RRAS PRMT1 IRF3 PRRG2 BCL2L12 SCAF1 NOSIP PRR12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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