Hs00992885_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154515922 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2			NP_001164603.1
	NM_001171133.2			NP_001164604.1
	NM_001171134.2	1	321	NP_001164605.1
	NM_001282311.1	1	321	NP_001269240.1
	NM_001282312.1			NP_001269241.1
	NM_021806.3	1	321	NP_068578.2
	XM_005274714.3			XP_005274771.1
	XM_005274716.3			XP_005274773.1
	XM_005277879.4			XP_005277936.1
	XM_006724831.2			XP_006724894.1
	XM_006724832.3			XP_006724895.1
	XM_006724833.2			XP_006724896.1
	XM_006724834.2	1	229	XP_006724897.1
	XM_017029699.1	1	328	XP_016885188.1
	XM_017029700.1	1	327	XP_016885189.1
	XM_017029701.1			XP_016885190.1
	AK024601.1
	AK057945.1
	AK294116.1	1	284
	AK314682.1	1	239
	AL539139.3	1	321
	BC002934.1	1	225	AAH02934.1
	BC008912.2			AAH08912.1
	BM457676.1
	CX867071.1
	X87193.1	1	128	CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	TMLHE-AS1 MIR3202-2 TMEM187 F8 SMIM9 H2AFB3 IKBKG FAM223A CTAG1A CMC4 IRAK1 LOC101927830 LOC105373386 SPRY3 VBP1 BRCC3 TKTL1 F8A1 CLIC2 MECP2 TAZ G6PD F8A3 FAM223B LAGE3 DKC1 MIR1184-3 TMLHE LOC107987332 SNORA56 HCFC1-AS1 MIR1184-2 SNORA36A FUNDC2 MPP1 GDI1 CH17-340M24.3 MIR664B MIR718 MIR1184-1 EMD SNORA70 GAB3 PLXNA3 RPL10 MIR3202-1 MIR6858 CTAG1B ATP6AP1 MTCP1 DNASE1L1 FAM3A OPN1MW3 UBL4A TEX28 F8A2 H2AFB1 SLC10A3 OPN1LW FAM50A H2AFB2 CTAG2 HCFC1 RAB39B OPN1MW OPN1MW2 FLNA
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	CH17-340M24.3 EMD SNORA70 PLXNA3 RPL10 IKBKG FAM223A CTAG1A MIR6858 ATP6AP1 DNASE1L1 FAM3A OPN1MW3 UBL4A TEX28 LOC105373386 SLC10A3 TKTL1 OPN1LW FAM50A MECP2 TAZ G6PD LAGE3 OPN1MW LOC107987332 OPN1MW2 FLNA GDI1
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	DUSP9 MIR3202-2 SLC6A8 PLXNB3 TMEM187 ATP2B3 IKBKG FAM223A CTAG1A BGN FAM58A IRAK1 PNMA6A LOC105373386 L1CAM TKTL1 MECP2 TAZ G6PD LAGE3 TREX2 LOC107987332 HCFC1-AS1 GDI1 LOC107983954 LOC105373383 CH17-340M24.3 MIR718 NAA10 EMD ZNF275 SNORA70 PLXNA3 RPL10 MIR3202-1 IDH3G SRPK3 MIR6858 ATP6AP1 SSR4 BCAP31 DNASE1L1 ARHGAP4 FAM3A OPN1MW3 UBL4A TEX28 LOC105373381 SLC10A3 RENBP MAGEA1 OPN1LW FAM50A LOC105373377 PNCK LCA10 HCFC1 LOC105373378 PDZD4 OPN1MW AVPR2 ZFP92 ABCD1 OPN1MW2 HAUS7 FLNA
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	CTAG1A FAM3A IKBKG FAM223A G6PD

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function