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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2276598 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01044754_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 33 5903 NP_001080.2
AB070929.1 BAB86781.1
AB210044.1 32 5729 BAE06126.1
BC140895.1 30 5228
BC146866.1 30 5228
BC151840.1 33 5885
U78735.1 33 5750 AAC50967.1
X97187.1 32 5538 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication CCDC78 MIR940 MIR6768 NOXO1 CHTF18 TBC1D24 LOC729652 NUBP2 NPW FAM234A MIR3178 C1QTNF8 PTX4 SNORA78 CLCN7 RNPS1 LINC00254 HBA1 LOC105371045 PDIA2 ARHGDIG LUC7L SNORA64 GNG13 TMEM204 BRICD5 UNKL METRN MAPK8IP3 LMF1-AS1 RPL3L LOC105371047 SSTR5-AS1 LOC100134368 SNORA10 SSTR5 MSLN MRPL28 NME3 CAPN15 LOC100287175 ERVK13-1 RHBDL1 MIR5587 MIR6511B1 MIR6767 PRSS29P JMJD8 TPSG1 RHBDF1 MIR3180-5 TRAF7 LOC652276 SNHG9 NARFL DDX11L10 LOC105371046 WDR24 MIR1225 MSRB1 NTN3 FBXL16 LOC105371049 LMF1 SOX8 SNHG19 FAHD1 LOC101929280 ATP6V0C WDR90 RAB11FIP3 GNPTG NHLRC4 FAM173A CCDC154 LOC107984876 MIR4717 DECR2 WASIR2 HAGH UBE2I PKD1 RAB40C PRR25 MIR3677 MCRIP2 E4F1 NPRL3 SYNGR3 SLC9A3R2 TSR3 TELO2 EME2 HS3ST6 NME4 PIGQ STUB1 HBM MPG RHOT2 HBZ PRSS27 BAIAP3 MIR3176 RPUSD1 HBA2 RAB26 SNORD60 HBQ1 MLST8 CASKIN1 RNF151 MIR662 PRR35 MEIOB LINC00235 HAGHL METTL26 TPSD1 NDUFB10 TSC2 MIR6859-4 RPL23AP5 TPSB2 LOC106660606 HN1L LOC105371184 IFT140 ABCA17P MRPS34 AMDHD2 AXIN1 C16orf59 LOC105371038 ZNF598 SPSB3 MIR3177 RGS11 ECI1 POLR3K WFIKKN1 LOC107987233 TPSAB1 FLJ42627 MIR4516 ABCA3 SNRNP25 CEMP1 GFER IGFALS TBL3 CCNF DNASE1L2 CRAMP1 RPS2 C16orf91 TMEM8A PDPK1 PGP NTHL1 CACNA1H KCTD5
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR6511B1 MIR940 LOC106660606 MIR3677 E4F1 SYNGR3 SLC9A3R2 NOXO1 MIR3180-5 NPW TRAF7 RNPS1 ZNF598 MIR1225 RAB26 BRICD5 LOC105371049 SNORD60 ECI1 MLST8 SNHG19 CASKIN1 MIR4516 ABCA3 GFER TBL3 DNASE1L2 TSC2 PGP MIR4717 NTHL1 PKD1
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR940 LOC106660606 MIR3677 RNPS1 MIR4717 ABCA17P ABCA3
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain MIR6511B1 MIR940 LOC106660606 MIR6767 MIR3677 MIR6768 E4F1 ABCA17P TBC1D24 LOC729652 MIR3180-5 AMDHD2 MIR3178 TRAF7 LOC652276 C16orf59 RNPS1 MIR1225 NTN3 RAB26 BRICD5 LOC105371049 SNORD60 ECI1 MLST8 SNHG19 CASKIN1 MIR4516 ABCA3 ATP6V0C CEMP1 CCNF DNASE1L2 TSC2 PDPK1 PGP MIR4717 PKD1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RAB26 MIR940 LOC106660606 BRICD5 MIR3677 SNORD60 ECI1 E4F1 MLST8 SNHG19 CASKIN1 ABCA3 TRAF7 DNASE1L2 RNPS1 PGP MIR4717

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