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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2288232 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01050006_cn
Size
Availability Made To Order
Catalog # 4400291
Price 475.00
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 21 3510 NP_001080.2
AB070929.1 18 2840 BAB86781.1
AB210044.1 20 3336 BAE06126.1
BC140895.1 18 2835
BC146866.1 18 2835
BC151840.1 21 3492
U78735.1 21 3357 AAC50967.1
X97187.1 20 3145 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication TSC2 DDX11L10 NPRL3 SYNGR3 PRSS29P TBL3 RGS11 HN1L NDUFB10 LMF1-AS1 MLST8 PIGQ RHOT2 MSLN SNORD60 HBQ1 PGP ATP6V0C MIR4516 UBE2I CCDC154 NUBP2 SSTR5 RPS2 HBZ RHBDF1 RPUSD1 HAGHL GNG13 NTHL1 RAB11FIP3 PRR25 RPL23AP5 MRPS34 PTX4 SNORA10 FAM173A SLC9A3R2 IGFALS LOC729652 CAPN15 CHTF18 KCTD5 FBXL16 LOC105371047 ABCA17P TPSAB1 LOC101929280 MRPL28 MSRB1 RAB40C CACNA1H SOX8 RNPS1 NTN3 DNASE1L2 CCNF PKD1 CCDC78 MIR3177 DECR2 ECI1 TSR3 PRSS27 MIR940 TMEM8A MIR1225 SNORA64 RHBDL1 RPL3L LINC00235 CASKIN1 TBC1D24 E4F1 BRICD5 SPSB3 WDR24 WASIR2 FAM234A TPSB2 AMDHD2 PDIA2 LOC652276 TRAF7 POLR3K IFT140 AXIN1 C16orf91 MAPK8IP3 LMF1 MPG LOC107987233 MIR3178 LOC107984876 MEIOB MIR3176 LOC105371049 SNHG19 LOC105371038 RNF151 PDPK1 ARHGDIG ZNF598 FLJ42627 JMJD8 STUB1 GFER LOC105371046 TPSD1 HBA1 MIR6768 WDR90 LUC7L MIR3677 LOC100134368 MIR662 RAB26 HAGH SNORA78 BAIAP3 TMEM204 MIR3180-5 C1QTNF8 SNRNP25 CLCN7 LINC00254 SSTR5-AS1 NPW ERVK13-1 WFIKKN1 METTL26 MIR6511B1 NHLRC4 PRR35 NME4 HBM MIR4717 NOXO1 METRN SNHG9 ABCA3 C16orf59 LOC105371045 MCRIP2 CEMP1 NME3 MIR5587 CRAMP1 MIR6767 EME2 LOC100287175 UNKL LOC106660606 TELO2 HBA2 MIR6859-4 HS3ST6 TPSG1 LOC105371184 FAHD1 GNPTG NARFL
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR3180-5 TRAF7 TSC2 NPW SYNGR3 TBL3 MIR6511B1 MLST8 RNPS1 MIR4717 NOXO1 SNORD60 DNASE1L2 LOC105371049 SNHG19 PKD1 PGP MIR4516 ECI1 ZNF598 MIR940 ABCA3 MIR1225 GFER NTHL1 CASKIN1 E4F1 MIR3677 BRICD5 SLC9A3R2 LOC106660606 RAB26
nsv571201 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR940 RNPS1 ABCA3 ABCA17P MIR4717 MIR3677 LOC106660606
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC652276 MIR3180-5 ABCA17P TRAF7 TSC2 MIR6511B1 MLST8 RNPS1 MIR4717 MIR3178 SNORD60 NTN3 DNASE1L2 CCNF LOC105371049 SNHG19 PKD1 PGP ATP6V0C MIR4516 ECI1 PDPK1 MIR940 ABCA3 C16orf59 MIR1225 CEMP1 MIR6767 CASKIN1 TBC1D24 E4F1 MIR6768 MIR3677 BRICD5 LOC106660606 RAB26 LOC729652 AMDHD2
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion MIR940 ABCA3 TRAF7 CASKIN1 MLST8 RNPS1 E4F1 MIR4717 MIR3677 BRICD5 SNORD60 LOC106660606 DNASE1L2 SNHG19 RAB26 PGP ECI1
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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