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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2288232 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01050006_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 21
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 21 3510 NP_001080.2
AB070929.1 18 2840 BAB86781.1
AB210044.1 20 3336 BAE06126.1
BC140895.1 18 2835
BC146866.1 18 2835
BC151840.1 21 3492
U78735.1 21 3357 AAC50967.1
X97187.1 20 3145 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication MIR3176 MIR4717 MIR3177 MIR4516 LOC105371046 ATP6V0C MIR5587 RPS2 MIR6768 TMEM8A C1QTNF8 CACNA1H SNORA10 AXIN1 MRPS34 WDR24 SYNGR3 NHLRC4 TPSG1 RAB40C MSRB1 LOC107984876 UBE2I HBA1 HAGH RGS11 SNHG9 NTHL1 HAGHL MIR3178 ZNF598 TELO2 RPL3L CRAMP1 FLJ42627 ARHGDIG TPSD1 LOC729652 NTN3 NPW PRSS27 LOC105371038 PIGQ MIR1225 LOC105371047 RHBDF1 LUC7L C16orf91 CASKIN1 WFIKKN1 MCRIP2 LMF1-AS1 LOC105371184 JMJD8 LOC105371045 RAB26 ABCA3 HS3ST6 WDR90 LOC106660606 ECI1 SNORD60 HBQ1 RHBDL1 FAM234A NARFL METRN PRR25 SNORA64 DNASE1L2 FAHD1 BAIAP3 HBA2 FAM173A LOC100134368 HBM SLC9A3R2 PRR35 CEMP1 LOC652276 PTX4 SNHG19 MRPL28 ABCA17P LOC107987233 NUBP2 TBL3 C16orf59 UNKL MIR6511B1 HBZ TSR3 CCDC78 SOX8 LOC100287175 PRSS29P METTL26 CCDC154 DDX11L10 CLCN7 PDIA2 LOC101929280 TBC1D24 E4F1 NOXO1 TRAF7 EME2 MPG BRICD5 MLST8 RAB11FIP3 ERVK13-1 RPL23AP5 STUB1 DECR2 AMDHD2 MIR3180-5 IGFALS HN1L LMF1 CCNF SNRNP25 MEIOB SNORA78 RNPS1 LOC105371049 CHTF18 RHOT2 TMEM204 GNPTG SSTR5 RPUSD1 PGP TSC2 KCTD5 NME3 GFER MIR940 NPRL3 IFT140 MSLN TPSB2 LINC00254 CAPN15 SPSB3 WASIR2 NME4 MIR6767 TPSAB1 MIR6859-4 LINC00235 PKD1 MIR3677 NDUFB10 SSTR5-AS1 MAPK8IP3 PDPK1 POLR3K FBXL16 GNG13 RNF151 MIR662
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss MIR4717 NPW SLC9A3R2 MIR3180-5 MIR1225 SNHG19 MIR4516 TBL3 CASKIN1 RNPS1 LOC105371049 MIR6511B1 PGP SYNGR3 TSC2 RAB26 ABCA3 GFER MIR940 LOC106660606 ECI1 SNORD60 E4F1 NTHL1 PKD1 ZNF598 NOXO1 TRAF7 MIR3677 DNASE1L2 BRICD5 MLST8
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss MIR4717 ABCA3 RNPS1 MIR3677 MIR940 LOC106660606 ABCA17P
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain LOC729652 NTN3 MIR4717 CEMP1 AMDHD2 MIR3180-5 LOC652276 MIR1225 SNHG19 MIR4516 ABCA17P CASKIN1 ATP6V0C CCNF RNPS1 MIR6768 LOC105371049 C16orf59 MIR6511B1 PGP TSC2 RAB26 ABCA3 MIR940 LOC106660606 ECI1 SNORD60 TBC1D24 E4F1 MIR3178 MIR6767 PKD1 TRAF7 MIR3677 DNASE1L2 PDPK1 BRICD5 MLST8
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion RAB26 MIR4717 ABCA3 MIR940 LOC106660606 SNHG19 ECI1 SNORD60 E4F1 CASKIN1 RNPS1 TRAF7 MIR3677 DNASE1L2 BRICD5 MLST8 PGP
nsv571202 Chr.16:2278649 - 2289619 on Build GRCh38 Loss ABCA3

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