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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49646622 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01130376_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Exon 7 - Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss PRMT1 NOSIP RRAS SCAF1 ADM5 MIR5088 PRRG2 BCL2L12 CPT1C IRF3 PRR12
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss PRMT1 NOSIP RRAS SCAF1 ADM5 MIR5088 PRRG2 BCL2L12 CPT1C IRF3 PRR12
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-A3 SNAR-C4 VRK3 LIG1 LIN7B SNORD33 SNRNP70 MIR150 MIR4324 CABP5 SNORD35B CGB8 SNAR-A11 SLC17A7 NUCB1 SNAR-A8 C19orf68 SNAR-A12 CCDC114 PRR12 LOC101059948 SLC6A16 RPL18 NTN5 PTH2 SPHK2 MIR4751 CARD8 LHB IL4I1 BSPH1 FAM83E SNAR-A7 SNAR-G2 PLA2G4C SNAR-B1 SEC1P CGB5 SPACA4 FUT2 ALDH16A1 SIGLEC16 SNORD34 BCL2L12 CGB1 FUT1 GYS1 PTOV1 LOC105372430 SNAR-A1 SCAF1 CGB7 LOC101928295 SULT2B1 CCDC155 PPFIA3 SNAR-A14 TMEM143 GRWD1 PRRG2 AP2A1 RPL13A PLEKHA4 SNAR-C2 SNAR-G1 PTOV1-AS2 PRMT1 DBP SNAR-C5 SNAR-C1 MIR4750 SNAR-A5 SIGLEC11 NTF4 PPP1R15A NUP62 TSKS PLA2G4C-AS1 BCAT2 ADM5 CGB2 KCNJ14 SNORD35A RRAS DHDH SNAR-A9 CD37 CPT1C SNAR-A13 SNAR-B2 MIR6800 MAMSTR MIR6798 AKT1S1 PNKP CARD8-AS1 SNAR-A6 TEAD2 EMP3 FLT3LG MIR5088 NUCB1-AS1 RUVBL2 IRF3 FCGRT SNORD32A MIR4749 TRPM4 ZNF473 FGF21 FLJ26850 RCN3 DKKL1 HSD17B14 LOC105447645 IZUMO1 SYNGR4 C19orf73 KDELR1 LOC100287477 RASIP1 SNAR-A2 SNAR-A10 PTOV1-AS1 TULP2 CYTH2 SNAR-D CGB3 HRC FUZ ATF5 MED25 NOSIP GFY ELSPBP1 RPS11 PIH1D1 SNAR-A4 SNAR-C3 CA11 GRIN2D TBC1D17 LMTK3 FTL ZNF114 BAX KCNA7 MIR6799
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain MIR6800 MED25 TSKS ADM5 MIR5088 BCL2L12 AP2A1 IRF3 PTOV1-AS2 PRMT1 PTOV1 PTOV1-AS1 RRAS SCAF1 MIR4749 FUZ MIR6799 CPT1C PRR12
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain PRMT1 NOSIP RRAS SCAF1 ADM5 MIR5088 PRRG2 BCL2L12 CPT1C IRF3 PRR12
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion NUP62 TSKS ADM5 BCL2L12 PTOV1 PTOV1-AS1 RRAS SCAF1 FUZ CPT1C PRR12 MIR6800 ATF5 MED25 AKT1S1 NOSIP PNKP MIR4751 MIR5088 PRRG2 IL4I1 AP2A1 IRF3 PTOV1-AS2 PRMT1 TBC1D17 MIR4749 MIR4750 MIR6799
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD33 TSKS MIR150 ADM5 SNORD34 BCL2L12 SNORD35B SNORD35A PTOV1-AS1 RRAS SCAF1 FUZ CPT1C PRR12 MIR6800 MED25 NOSIP MIR5088 PRRG2 RPS11 AP2A1 RPL13A IRF3 FCGRT PRMT1 SNORD32A MIR6799 RCN3
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss PRMT1 NOSIP RRAS SCAF1 PRRG2 BCL2L12 IRF3 PRR12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss SCAF1 IRF3

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