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See other FAM3A CNV Assays ›
Gene Symbol
FAM3A
Assay Reference Genome
Location

Chr.X:154512840 on build GRCh38
Cytoband
Xq28
Assay ID Hs01155136_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 60343

Gene Name:

 family with sequence similarity 3 member A

Gene Aliases:

 2.19, DLD, DXS560S, XAP-7

Location:

 Chr.X:154506159-154516249 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 2 - Exon 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
FAM3A NM_001171132.2 NP_001164603.1
NM_001171133.2 NP_001164604.1
NM_001171134.2 NP_001164605.1
NM_001282311.1 NP_001269240.1
NM_001282312.1 NP_001269241.1
NM_021806.3 NP_068578.2
XM_005274714.3 XP_005274771.1
XM_005274716.3 XP_005274773.1
XM_005277879.4 XP_005277936.1
XM_006724831.2 XP_006724894.1
XM_006724832.3 XP_006724895.1
XM_006724833.2 XP_006724896.1
XM_006724834.2 XP_006724897.1
XM_011531185.2 XP_011529487.1
XM_017029699.1 XP_016885188.1
XM_017029700.1 XP_016885189.1
XM_017029701.1 XP_016885190.1
XM_017029702.1 XP_016885191.1
AK024601.1
AK057945.1
AK294116.1
AK314682.1
AL539139.3
BC002934.1 AAH02934.1
BC008912.2 AAH08912.1
BM457676.1
CX867071.1
X87193.1 CAA60645.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv33784 Chr.X:153962665 - 155699588 on Build GRCh38 Gain+Loss MECP2 SLC10A3 OPN1MW CH17-340M24.3 CTAG1A RPL10 SNORA56 H2AFB1 CTAG1B LAGE3 MIR3202-1 PLXNA3 H2AFB2 MPP1 HCFC1 GAB3 MTCP1 VBP1 RAB39B F8A2 MIR6858 IRAK1 SPRY3 G6PD ATP6AP1 TAZ MIR664B TEX28 TMLHE-AS1 TMLHE F8 HCFC1-AS1 SNORA70 MIR1184-1 TKTL1 H2AFB3 LOC105373386 FAM50A MIR718 FAM3A OPN1MW3 CLIC2 DNASE1L1 GDI1 MIR1184-2 UBL4A LOC101927830 EMD CTAG2 LOC107987332 FAM223B OPN1LW SNORA36A FAM223A FLNA CMC4 FUNDC2 MIR1184-3 TMEM187 SMIM9 F8A1 DKC1 MIR3202-2 IKBKG F8A3 OPN1MW2 BRCC3
nsv519042 Chr.X:154082978 - 154601444 on Build GRCh38 Gain MECP2 SLC10A3 OPN1MW CH17-340M24.3 CTAG1A RPL10 TKTL1 LOC105373386 FAM50A LAGE3 FAM3A OPN1MW3 PLXNA3 DNASE1L1 GDI1 UBL4A MIR6858 G6PD EMD ATP6AP1 LOC107987332 TAZ TEX28 OPN1LW FAM223A FLNA IKBKG OPN1MW2 SNORA70
esv33199 Chr.X:153065734 - 154591978 on Build GRCh38 Gain+Loss MECP2 SLC10A3 DUSP9 OPN1MW CH17-340M24.3 CTAG1A RPL10 SSR4 LAGE3 MIR3202-1 SLC6A8 PLXNB3 PLXNA3 SRPK3 HCFC1 LOC105373381 MIR6858 IRAK1 IDH3G G6PD MAGEA1 ATP6AP1 ZFP92 TAZ TEX28 LOC107983954 NAA10 HAUS7 BGN PNCK HCFC1-AS1 SNORA70 ATP2B3 TKTL1 LOC105373386 FAM50A MIR718 RENBP AVPR2 FAM3A OPN1MW3 PNMA6A DNASE1L1 GDI1 UBL4A ABCD1 L1CAM ARHGAP4 EMD LCA10 LOC107987332 TREX2 OPN1LW ZNF275 FAM223A FLNA FAM58A BCAP31 LOC105373377 LOC105373383 PDZD4 TMEM187 MIR3202-2 IKBKG OPN1MW2 LOC105373378
nsv508816 Chr.X:154492171 - 154591783 on Build GRCh38 Insertion FAM3A G6PD IKBKG CTAG1A FAM223A

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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