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See other ABCA3 CNV Assays ›
Gene Symbol
ABCA3
Assay Reference Genome
Location

Chr.16:2276068 on build GRCh38
Cytoband
16p13.3
Assay ID Hs01229597_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 21

Gene Name:

 ATP binding cassette subfamily A member 3

Gene Aliases:

 ABC-C, ABC3, EST111653, LBM180, SMDP3

Location:

 Chr.16:2275878-2340746 on Build GRCh38

Assay Gene Location:

 Within Exon 33
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ABCA3 NM_001089.2 33 6433 NP_001080.2
AB210044.1 32 6259 BAE06126.1
BC151840.1 33 6415
BP397501.1 1 310
U78735.1 33 6280 AAC50967.1
X97187.1 32 6068 CAA65825.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2422427 Chr.16:10001 - 2723164 on Build GRCh38 Duplication BRICD5 AMDHD2 NME4 FLJ42627 PKD1 RAB11FIP3 HS3ST6 RPL23AP5 LINC00254 SNORA64 RAB40C HN1L MRPL28 MIR6859-4 RPUSD1 RHBDF1 IFT140 MLST8 NPW LOC106660606 SSTR5 TMEM8A LOC105371049 CCNF WDR24 METTL26 ZNF598 MIR4717 NUBP2 RGS11 SNHG9 TPSAB1 TMEM204 SSTR5-AS1 TSC2 LOC105371038 LOC105371045 HAGHL SNRNP25 AXIN1 WASIR2 MIR940 RAB26 LOC729652 SNORA78 MSRB1 FBXL16 CACNA1H HAGH MPG CASKIN1 MSLN LINC00235 MIR662 WFIKKN1 ECI1 STUB1 NARFL IGFALS NME3 LOC100287175 PDPK1 MIR3677 UBE2I TBL3 KCTD5 GNPTG NTHL1 PGP MEIOB JMJD8 CCDC154 CLCN7 FAM173A FAM234A E4F1 C1QTNF8 MIR3176 HBQ1 CEMP1 RPL3L TPSD1 PDIA2 MAPK8IP3 GNG13 PIGQ EME2 LMF1-AS1 LOC105371047 SPSB3 LMF1 PTX4 NTN3 CHTF18 MCRIP2 PRSS29P RNF151 LOC100134368 FAHD1 WDR90 SOX8 ERVK13-1 ABCA3 HBA1 SNORA10 TBC1D24 MIR5587 RHBDL1 PRR35 RPS2 DECR2 HBA2 MRPS34 MIR4516 MIR3178 LOC105371046 NOXO1 DDX11L10 LOC101929280 TPSG1 C16orf91 RNPS1 LUC7L CCDC78 MIR6768 POLR3K RHOT2 TSR3 SNHG19 DNASE1L2 CAPN15 CRAMP1 MIR3177 UNKL NDUFB10 LOC652276 LOC107984876 LOC107987233 NHLRC4 ARHGDIG SNORD60 ABCA17P ATP6V0C PRR25 MIR3180-5 TRAF7 SLC9A3R2 PRSS27 TPSB2 C16orf59 NPRL3 GFER HBM METRN MIR6767 SYNGR3 MIR1225 HBZ BAIAP3 MIR6511B1 LOC105371184 TELO2
nsv471072 Chr.16:1971892 - 2317508 on Build GRCh38 Loss BRICD5 PKD1 SNHG19 DNASE1L2 CASKIN1 MLST8 NPW LOC106660606 LOC105371049 ABCA3 ECI1 SNORD60 ZNF598 MIR4717 MIR3180-5 TRAF7 SLC9A3R2 MIR4516 MIR3677 TBL3 TSC2 NTHL1 PGP NOXO1 GFER SYNGR3 MIR1225 E4F1 MIR940 MIR6511B1 RAB26 RNPS1
nsv457353 Chr.16:2255538 - 2365929 on Build GRCh38 Loss LOC106660606 MIR3677 ABCA3 ABCA17P MIR940 MIR4717 RNPS1
nsv1052260 Chr.16:2074546 - 2629655 on Build GRCh38 Gain BRICD5 MIR6768 AMDHD2 PKD1 SNHG19 DNASE1L2 NTN3 CASKIN1 MLST8 LOC652276 LOC106660606 LOC105371049 ABCA3 CCNF ECI1 SNORD60 ABCA17P ATP6V0C MIR4717 TBC1D24 MIR3180-5 TRAF7 PDPK1 MIR4516 MIR3677 TSC2 C16orf59 MIR3178 PGP MIR6767 MIR1225 E4F1 MIR940 MIR6511B1 RAB26 LOC729652 CEMP1 RNPS1
nsv952902 Chr.16:2143400 - 2339999 on Build GRCh38 Deletion BRICD5 TRAF7 MIR3677 SNHG19 DNASE1L2 PGP CASKIN1 MLST8 E4F1 LOC106660606 ABCA3 ECI1 SNORD60 MIR940 MIR4717 RAB26 RNPS1

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