Hs01271955_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137030536 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	2052	NP_004470.1
	BC086312.1	2	2052	AAH86312.1
	U08112.1			AAA56869.1
	U11282.1			AAA20468.1
	X78031.1	2	1325	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	LRRC26 SAPCD2 UAP1L1 GRIN1 PRR31 C9orf142 TMEM210 ABCA2 LCNL1 NPDC1 LOC101930307 DPP7 C9orf139 PTGDS CLIC3 MAN1B1 FUT7 MIR3621 ENTPD2 MAN1B1-AS1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	C9orf172 GRIN1 PNPLA7 LCNL1 MIR4292 C9orf173-AS1 LOC101930307 RNF208 C9orf139 PTGDS EDF1 NOXA1 RABL6 SAPCD2 CYSRT1 TMEM210 ABCA2 MAMDC4 STPG3 NDOR1 MIR3621 NELFB ENTPD8 UAP1L1 MIR4479 TOR4A SSNA1 CCDC183 MIR7114 LCN12 CLIC3 NRARP FAM166A FUT7 ENTPD2 LRRC26 RNF224 TUBB4B PHPT1 EXD3 ANAPC2 C8G PRR31 TRAF2 C9orf142 TMEM203 CCDC183-AS1 NSMF NPDC1 SLC34A3 DPP7 MAN1B1 TPRN FBXW5 MAN1B1-AS1
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	SAPCD2 UAP1L1 C8G PRR31 C9orf142 ABCA2 LCNL1 NPDC1 LOC101930307 DPP7 LCN12 C9orf139 PTGDS CLIC3 MAN1B1 FUT7 ENTPD2 MAN1B1-AS1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	SNHG7 C9orf172 MIR4673 GRIN1 LCN10 C9orf163 SNORA17B LCNL1 LOC100128593 SEC16A MIR4292 SNORA17A SNAPC4 LOC101930307 LINC01451 C9orf139 PTGDS EDF1 LCN6 RABL6 MIR126 SAPCD2 PMPCA EGFL7 LCN8 TMEM210 ABCA2 MAMDC4 DNLZ NOTCH1 MIR6722 MIR4674 MIR3621 UAP1L1 INPP5E MIR4479 CCDC183 LCN12 CLIC3 HSPC324 FUT7 ENTPD2 LRRC26 PHPT1 TMEM141 C8G PRR31 TRAF2 C9orf142 AGPAT2 NALT1 CARD9 LCN15 CCDC183-AS1 FAM69B NPDC1 DPP7 SDCCAG3 MAN1B1 FBXW5 MAN1B1-AS1
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	LRRC26 SAPCD2 UAP1L1 GRIN1 ANAPC2 TMEM210 SSNA1 NPDC1 LOC101930307 DPP7 C9orf139 MAN1B1 FUT7 MIR3621 ENTPD2 MAN1B1-AS1
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	SNHG7 C9orf172 GRIN1 LCN10 SNORA17B LCNL1 LOC100128593 MIR4292 SNORA17A C9orf173-AS1 LOC101930307 LINC01451 RNF208 C9orf139 PTGDS EDF1 LCN6 RABL6 MIR126 SAPCD2 EGFL7 LCN8 CYSRT1 TMEM210 ABCA2 MAMDC4 STPG3 MIR6722 NDOR1 MIR3621 NELFB UAP1L1 MIR4479 TOR4A SSNA1 CCDC183 LCN12 CLIC3 NRARP HSPC324 FAM166A FUT7 ENTPD2 LRRC26 RNF224 TUBB4B PHPT1 EXD3 ANAPC2 TMEM141 C8G PRR31 TRAF2 C9orf142 TMEM203 AGPAT2 LCN15 CCDC183-AS1 FAM69B NPDC1 SLC34A3 DPP7 MAN1B1 TPRN FBXW5 MAN1B1-AS1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	NPDC1 C9orf139 FUT7 ABCA2 ENTPD2

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity