Hs01273473_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154506570 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2	10	1307	NP_001164603.1
	NM_001171133.2	9	1193	NP_001164604.1
	NM_001171134.2	8	1353	NP_001164605.1
	NM_001282311.1	10	1502	NP_001269240.1
	NM_001282312.1	10	1248	NP_001269241.1
	NM_021806.3	9	1404	NP_068578.2
	XM_005274714.3	11	1373	XP_005274771.1
	XM_005274716.3	11	1352	XP_005274773.1
	XM_005277879.4	9	1262	XP_005277936.1
	XM_006724831.2	11	1376	XP_006724894.1
	XM_006724832.3	10	1337	XP_006724895.1
	XM_006724833.2	10	1301	XP_006724896.1
	XM_006724834.2	10	1489	XP_006724897.1
	XM_011531185.2	8	934	XP_011529487.1
	XM_017029699.1	9	1649	XP_016885188.1
	XM_017029700.1	9	1624	XP_016885189.1
	XM_017029701.1	10	1527	XP_016885190.1
	XM_017029702.1	9	1140	XP_016885191.1
	AK024601.1	10	1265
	AK057945.1	10	1122
	AK124890.1	6	3595
	AK294116.1
	BC002934.1	10	1406	AAH02934.1
	BC008912.2	9	1055	AAH08912.1
	X74610.1	1	98
	X87193.1	9	1211	CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	IRAK1 CH17-340M24.3 MIR718 DKC1 HCFC1 GAB3 F8 FAM223B LOC107987332 SNORA36A OPN1LW MIR664B HCFC1-AS1 IKBKG PLXNA3 G6PD TKTL1 EMD OPN1MW FAM3A TAZ UBL4A SNORA70 MIR1184-1 TMEM187 CTAG1A BRCC3 F8A3 H2AFB2 MECP2 SLC10A3 MIR1184-3 TMLHE-AS1 H2AFB1 FAM223A VBP1 F8A2 GDI1 CTAG2 LOC101927830 MIR1184-2 CLIC2 RAB39B SMIM9 FUNDC2 DNASE1L1 CMC4 OPN1MW3 LOC105373386 LAGE3 H2AFB3 TEX28 RPL10 SPRY3 F8A1 MPP1 FLNA SNORA56 ATP6AP1 MTCP1 TMLHE MIR3202-1 FAM50A CTAG1B MIR3202-2 OPN1MW2 MIR6858
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	FAM223A CH17-340M24.3 GDI1 DNASE1L1 OPN1MW3 LOC105373386 LAGE3 TEX28 LOC107987332 RPL10 OPN1LW IKBKG PLXNA3 G6PD TKTL1 EMD OPN1MW FAM3A TAZ FLNA UBL4A SNORA70 CTAG1A ATP6AP1 FAM50A OPN1MW2 MIR6858 MECP2 SLC10A3
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	IRAK1 CH17-340M24.3 DUSP9 MIR718 HCFC1 NAA10 SLC6A8 SRPK3 LOC105373381 LOC107987332 OPN1LW HCFC1-AS1 IKBKG PLXNA3 G6PD TKTL1 EMD OPN1MW FAM3A LOC105373377 BGN TAZ UBL4A SNORA70 ARHGAP4 TMEM187 CTAG1A ABCD1 LOC107983954 AVPR2 MECP2 SLC10A3 ZFP92 FAM223A RENBP GDI1 IDH3G PNCK LOC105373378 DNASE1L1 ATP2B3 OPN1MW3 LOC105373386 LAGE3 LOC105373383 TEX28 RPL10 MAGEA1 PNMA6A PDZD4 L1CAM FLNA BCAP31 ATP6AP1 ZNF275 PLXNB3 SSR4 LCA10 MIR3202-1 FAM50A HAUS7 MIR3202-2 OPN1MW2 TREX2 FAM58A MIR6858
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	IKBKG G6PD FAM223A FAM3A CTAG1A

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function