Hs01273473_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154506570 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 10

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2	10	1307	NP_001164603.1
	NM_001171133.2	9	1193	NP_001164604.1
	NM_001171134.2	8	1353	NP_001164605.1
	NM_001282311.1	10	1502	NP_001269240.1
	NM_001282312.1	10	1248	NP_001269241.1
	NM_021806.3	9	1404	NP_068578.2
	XM_005274714.3	11	1373	XP_005274771.1
	XM_005274716.3	11	1352	XP_005274773.1
	XM_005277879.4	9	1262	XP_005277936.1
	XM_006724831.2	11	1376	XP_006724894.1
	XM_006724832.3	10	1337	XP_006724895.1
	XM_006724833.2	10	1301	XP_006724896.1
	XM_006724834.2	10	1489	XP_006724897.1
	XM_011531185.2	8	934	XP_011529487.1
	XM_017029699.1	9	1649	XP_016885188.1
	XM_017029700.1	9	1624	XP_016885189.1
	XM_017029701.1	10	1527	XP_016885190.1
	XM_017029702.1	9	1140	XP_016885191.1
	AK024601.1	10	1265
	AK057945.1	10	1122
	AK124890.1	6	3595
	AK294116.1
	BC002934.1	10	1406	AAH02934.1
	BC008912.2	9	1055	AAH08912.1
	X74610.1	1	98
	X87193.1	9	1211	CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	TKTL1 MTCP1 TMLHE-AS1 EMD CH17-340M24.3 FAM3A FAM223B HCFC1 OPN1LW MIR6858 CTAG1A F8 ATP6AP1 SNORA36A SNORA56 MECP2 TMLHE OPN1MW TAZ SMIM9 CTAG1B BRCC3 F8A3 CLIC2 F8A1 H2AFB3 LOC101927830 MIR3202-1 G6PD MIR718 MIR1184-1 F8A2 SNORA70 IKBKG LAGE3 OPN1MW2 FUNDC2 HCFC1-AS1 VBP1 RPL10 MIR3202-2 FAM223A CTAG2 CMC4 LOC105373386 OPN1MW3 FAM50A GAB3 FLNA TEX28 H2AFB2 SPRY3 PLXNA3 GDI1 H2AFB1 MIR1184-2 MIR664B MIR1184-3 DNASE1L1 SLC10A3 LOC107987332 MPP1 RAB39B TMEM187 IRAK1 UBL4A DKC1
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	TKTL1 RPL10 EMD FAM223A CH17-340M24.3 FAM3A OPN1LW MIR6858 LOC105373386 OPN1MW3 CTAG1A FAM50A FLNA TEX28 ATP6AP1 PLXNA3 MECP2 GDI1 OPN1MW TAZ DNASE1L1 SLC10A3 LOC107987332 G6PD SNORA70 IKBKG LAGE3 OPN1MW2 UBL4A
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	TKTL1 EMD LOC105373378 PNMA6A LOC105373383 CH17-340M24.3 FAM3A HCFC1 OPN1LW LOC107983954 MIR6858 PDZD4 CTAG1A SSR4 ATP6AP1 ZFP92 MECP2 OPN1MW TAZ PNCK LOC105373381 IDH3G L1CAM SRPK3 MIR3202-1 SLC6A8 G6PD MIR718 SNORA70 BGN IKBKG LAGE3 OPN1MW2 HCFC1-AS1 BCAP31 RPL10 MIR3202-2 LCA10 FAM223A TREX2 LOC105373386 OPN1MW3 FAM50A FLNA TEX28 LOC105373377 PLXNA3 AVPR2 PLXNB3 GDI1 MAGEA1 RENBP ABCD1 DNASE1L1 SLC10A3 LOC107987332 ATP2B3 HAUS7 NAA10 DUSP9 ARHGAP4 ZNF275 TMEM187 FAM58A IRAK1 UBL4A
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	IKBKG FAM223A FAM3A CTAG1A G6PD

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function