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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32935356 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01292609_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 2 3842 BAD92814.1
AB362554.1
AB362555.1
AB362556.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CD742571.1
CR407606.1 CAG28534.1
EL948395.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain HLA-DMA BRD2 HLA-DMB LOC100294145
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss HLA-DMA BRD2 HLA-DMB HLA-DOA LOC100294145
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMA HLA-DMB
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion GPANK1 C2-AS1 MICB TNXA RXRB HLA-DPB2 MSH5-SAPCD1 NOTCH4 CSNK2B ZBTB12 HLA-DRB1 TAPBP BTNL2 AGPAT1 MIR1236 NELFE HSPA1A LY6G5C GPSM3 HCP5 CYP21A2 HLA-DQA1 EGFL8 HLA-DOB MCCD1 DAXX PSMB8 VPS52 MIR219A1 APOM LOC100294145 PSMB9 C6orf48 PHF1 RING1 SKIV2L HLA-DRA HLA-DRB6 ATF6B HLA-DMB TNF SNORD117 SAPCD1-AS1 TAP2 LY6G6C HLA-DOA C6orf47 HCG24 HLA-DQB1-AS1 SNORD48 PPT2 EHMT2 LST1 HCG23 HSD17B8 HCG25 C2 RNF5 PPP1R2P1 DDX39B-AS1 RPS18 SLC39A7 MIR6721 LOC102725068 SLC44A4 B3GALT4 AIF1 SYNGAP1 VWA7 MSH5 CYP21A1P BRD2 LY6G6E PSMB8-AS1 COL11A2 MIR6832 CLIC1 LOC100507547 HCG26 MIR6833 MIR6873 PRRC2A NCR3 DDAH2 MIR6834 DDX39B C6orf10 SNORD84 PPT2-EGFL8 ATP6V1G2 SNORD52 C4A DXO PRRT1 AGER HLA-DPA1 RGL2 C6orf25 HLA-DQB2 LOC101929163 HLA-DPB1 HLA-DRB5 LTA SNORA38 LY6G6D CFB PFDN6 CUTA TNXB HSPA1B KIFC1 LY6G5B HLA-DQA2 FKBPL STK19 LY6G6F ATP6V1G2-DDX39B BAG6 C4B TAP1 WDR46 HLA-DQB1 NEU1 ZBTB22 MIR3135B PBX2 ABHD16A HSPA1L MIR4646 LSM2 HLA-DMA ZBTB9 LTB VARS NFKBIL1 SAPCD1 LOC100287329 MIR5004
nsv819732 Chr.6:32935299 - 32935507 on Build GRCh38 Loss HLA-DMB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion GPANK1 C2-AS1 MICB TNXA RXRB HLA-DPB2 MSH5-SAPCD1 NOTCH4 CSNK2B ZBTB12 HLA-DRB1 TAPBP BTNL2 AGPAT1 MIR1236 NELFE HSPA1A LY6G5C GPSM3 HCP5 CYP21A2 HLA-DQA1 EGFL8 HLA-DOB MCCD1 DAXX PSMB8 VPS52 MIR219A1 APOM LOC100294145 PSMB9 C6orf48 PHF1 RING1 SKIV2L HLA-DRA HLA-DRB6 ATF6B HLA-DMB TNF SNORD117 SAPCD1-AS1 TAP2 LY6G6C HLA-DOA C6orf47 HCG24 HLA-DQB1-AS1 SNORD48 PPT2 EHMT2 LST1 HCG23 HSD17B8 HCG25 C2 RNF5 PPP1R2P1 DDX39B-AS1 RPS18 SLC39A7 MIR6721 LOC102725068 SLC44A4 B3GALT4 AIF1 SYNGAP1 VWA7 MSH5 CYP21A1P BRD2 LY6G6E PSMB8-AS1 COL11A2 MIR6832 CLIC1 LOC100507547 HCG26 MIR6833 MIR6873 PRRC2A NCR3 DDAH2 MIR6834 DDX39B C6orf10 SNORD84 PPT2-EGFL8 ATP6V1G2 SNORD52 C4A DXO PRRT1 AGER HLA-DPA1 RGL2 C6orf25 HLA-DQB2 LOC101929163 HLA-DPB1 HLA-DRB5 LTA SNORA38 LY6G6D CFB PFDN6 CUTA TNXB HSPA1B KIFC1 LY6G5B HLA-DQA2 FKBPL STK19 LY6G6F ATP6V1G2-DDX39B BAG6 C4B TAP1 WDR46 HLA-DQB1 NEU1 ZBTB22 MIR3135B PBX2 ABHD16A HSPA1L MIR4646 LSM2 HLA-DMA ZBTB9 LTB VARS NFKBIL1 SAPCD1 LOC100287329 MIR5004
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion HLA-DPB1 PSMB9 RXRB PHF1 HLA-DPB2 RING1 HLA-DMB MIR6873 TAP2 TAPBP PFDN6 HLA-DOA CUTA HCG24 HLA-DQB1-AS1 KIFC1 MIR6834 HLA-DQA2 HSD17B8 HCG25 TAP1 WDR46 HLA-DQB1 PPP1R2P1 ZBTB22 HLA-DQA1 RPS18 SLC39A7 MIR3135B HLA-DOB DAXX PSMB8 B3GALT4 VPS52 MIR219A1 SYNGAP1 HLA-DPA1 HLA-DMA RGL2 BRD2 ZBTB9 PSMB8-AS1 HLA-DQB2 COL11A2 LOC100294145 MIR5004
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss PSMB8 PSMB9 TAP1 PPP1R2P1 HLA-DMA BRD2 HLA-DMB TAP2 PSMB8-AS1 LOC100294145

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