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See other HLA-DMB CNV Assays ›
Gene Symbol
HLA-DMB
Assay Reference Genome
Location

Chr.6:32935356 on build GRCh38
Cytoband
6p21.32
Assay ID Hs01292609_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 3109

Gene Name:

 major histocompatibility complex, class II, DM beta

Gene Aliases:

 D6S221E, RING7

Location:

 Chr.6:32934629-32941070 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 4 - Intron 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
HLA-DMB NM_002118.4 NP_002109.2
AB209577.1 2 3842 BAD92814.1
AB362554.1
AB362555.1
AB362556.1
AY645722.1 AAV97947.1
BC027175.1 AAH27175.1
CD742571.1
CR407606.1 CAG28534.1
EL948395.1
U15085.1 AAB60387.1
Z23139.1 CAA80670.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2759417 Chr.6:32898012 - 32996319 on Build GRCh38 Gain LOC100294145 HLA-DMB HLA-DMA BRD2
nsv483081 Chr.6:32882976 - 33031504 on Build GRCh38 Loss LOC100294145 HLA-DMB HLA-DMA HLA-DOA BRD2
nsv1161376 Chr.6:32913750 - 32953997 on Build GRCh38 Duplication HLA-DMB HLA-DMA
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion FKBPL LOC102725068 MIR6833 C6orf47 ATP6V1G2 AGER GPSM3 HLA-DOA HLA-DQA2 SAPCD1 C2-AS1 MCCD1 EHMT2 MIR219A1 GPANK1 DAXX HSD17B8 RNF5 HLA-DRB5 CLIC1 CYP21A2 LOC101929163 SNORD84 EGFL8 LY6G5C PRRT1 NEU1 CYP21A1P ZBTB9 NOTCH4 LY6G6E NELFE KIFC1 BRD2 SLC44A4 PRRC2A SKIV2L LY6G5B VWA7 AIF1 PPP1R2P1 HLA-DOB SAPCD1-AS1 HLA-DMB MSH5 HLA-DQB1-AS1 PSMB9 HLA-DRB6 PPT2 C6orf25 HSPA1B LOC100294145 MICB RGL2 RXRB BAG6 TNF NCR3 ZBTB22 MIR4646 HLA-DMA TAP1 SNORD52 TNXA ATF6B SLC39A7 HLA-DQB1 MIR5004 LSM2 LY6G6C RPS18 LTB BTNL2 TAP2 PSMB8 HSPA1A SNORD117 HCG24 C4B APOM HLA-DQA1 DXO PBX2 DDX39B SNORA38 HLA-DRB1 SNORD48 TAPBP HLA-DPB2 LST1 TNXB ATP6V1G2-DDX39B LY6G6F SYNGAP1 C2 PFDN6 DDX39B-AS1 ZBTB12 MIR6873 CUTA MIR6834 LY6G6D AGPAT1 RING1 MIR3135B HCG23 C6orf48 HLA-DPB1 HCG25 CFB C4A MIR1236 HLA-DRA VARS HSPA1L PSMB8-AS1 MIR6721 HLA-DPA1 PPT2-EGFL8 LTA DDAH2 HCP5 STK19 LOC100507547 HLA-DQB2 ABHD16A B3GALT4 CSNK2B VPS52 PHF1 NFKBIL1 LOC100287329 MIR6832 C6orf10 WDR46 HCG26 COL11A2 MSH5-SAPCD1
nsv819732 Chr.6:32935299 - 32935507 on Build GRCh38 Loss HLA-DMB
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion FKBPL LOC102725068 MIR6833 C6orf47 ATP6V1G2 AGER GPSM3 HLA-DOA HLA-DQA2 SAPCD1 C2-AS1 MCCD1 EHMT2 MIR219A1 GPANK1 DAXX HSD17B8 RNF5 HLA-DRB5 CLIC1 CYP21A2 LOC101929163 SNORD84 EGFL8 LY6G5C PRRT1 NEU1 CYP21A1P ZBTB9 NOTCH4 LY6G6E NELFE KIFC1 BRD2 SLC44A4 PRRC2A SKIV2L LY6G5B VWA7 AIF1 PPP1R2P1 HLA-DOB SAPCD1-AS1 HLA-DMB MSH5 HLA-DQB1-AS1 PSMB9 HLA-DRB6 PPT2 C6orf25 HSPA1B LOC100294145 MICB RGL2 RXRB BAG6 TNF NCR3 ZBTB22 MIR4646 HLA-DMA TAP1 SNORD52 TNXA ATF6B SLC39A7 HLA-DQB1 MIR5004 LSM2 LY6G6C RPS18 LTB BTNL2 TAP2 PSMB8 HSPA1A SNORD117 HCG24 C4B APOM HLA-DQA1 DXO PBX2 DDX39B SNORA38 HLA-DRB1 SNORD48 TAPBP HLA-DPB2 LST1 TNXB ATP6V1G2-DDX39B LY6G6F SYNGAP1 C2 PFDN6 DDX39B-AS1 ZBTB12 MIR6873 CUTA MIR6834 LY6G6D AGPAT1 RING1 MIR3135B HCG23 C6orf48 HLA-DPB1 HCG25 CFB C4A MIR1236 HLA-DRA VARS HSPA1L PSMB8-AS1 MIR6721 HLA-DPA1 PPT2-EGFL8 LTA DDAH2 HCP5 STK19 LOC100507547 HLA-DQB2 ABHD16A B3GALT4 CSNK2B VPS52 PHF1 NFKBIL1 LOC100287329 MIR6832 C6orf10 WDR46 HCG26 COL11A2 MSH5-SAPCD1
nsv830633 Chr.6:32829085 - 32995634 on Build GRCh38 Loss TAP2 PSMB8 PPP1R2P1 LOC100294145 HLA-DMB PSMB9 PSMB8-AS1 HLA-DMA TAP1 BRD2
nsv1119076 Chr.6:32595823 - 33480623 on Build GRCh38 Deletion SYNGAP1 SLC39A7 HLA-DQB1 PFDN6 MIR6873 ZBTB9 CUTA MIR6834 MIR5004 RING1 MIR3135B RPS18 KIFC1 BRD2 TAP2 PSMB8 HLA-DPB1 HCG25 PPP1R2P1 HCG24 HLA-DOB HLA-DMB HLA-DQB1-AS1 PSMB9 PSMB8-AS1 HLA-DOA HLA-DQA1 HLA-DPA1 LOC100294145 HLA-DQA2 RGL2 TAPBP HLA-DQB2 RXRB MIR219A1 B3GALT4 VPS52 DAXX HSD17B8 PHF1 HLA-DPB2 ZBTB22 WDR46 HLA-DMA COL11A2 TAP1

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