Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 23 - Exon 24 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C-AS1
LIG1
CABP5
ELSPBP1
BSPH1
PLA2G4C
C19orf68
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SIGLEC16
PPP1R15A
TEAD2
HSD17B14
SEC1P
MIR4749
RASIP1
CGB3
MED25
LOC105372430
CARD8
CGB5
FGF21
CPT1C
CD37
DBP
SNAR-C2
SIGLEC11
CYTH2
SNAR-A10
PNKP
PLA2G4C-AS1
ZNF114
SNRNP70
SNAR-A2
GRWD1
GFY
VRK3
PTOV1-AS1
SNORD35B
SNAR-A14
NTF4
FLT3LG
MIR4751
SYNGR4
PIH1D1
MIR6800
SNAR-B2
SNAR-A1
SNAR-C5
NUCB1-AS1
PTH2
NOSIP
ATF5
CA11
RRAS
SNAR-A5
SNAR-A4
DHDH
SPACA4
CGB7
CCDC114
SNAR-C1
LMTK3
TBC1D17
MAMSTR
NUCB1
FUT2
TULP2
PRRG2
DKKL1
ADM5
BCL2L12
RPL13A
AP2A1
PTOV1-AS2
SNAR-A8
MIR150
LIN7B
BAX
LOC101928295
ALDH16A1
IRF3
SNAR-A11
PTOV1
KCNA7
SCAF1
LOC100287477
SNAR-C4
KDELR1
C19orf68
LIG1
PLEKHA4
BCAT2
SNAR-A12
PRMT1
RPS11
RCN3
TMEM143
SLC6A16
CGB1
IZUMO1
PRR12
CGB2
SNAR-D
NTN5
RPL18
MIR4750
SLC17A7
FCGRT
ZNF473
SNAR-A7
FAM83E
LOC101059948
PPFIA3
GRIN2D
CARD8-AS1
MIR5088
C19orf73
SNORD32A
CCDC155
CABP5
LHB
SNAR-A13
SNAR-G2
CGB8
FLJ26850
SNAR-A3
SNAR-C3
BSPH1
SNORD35A
AKT1S1
TRPM4
LOC105447645
SULT2B1
SNAR-A9
ELSPBP1
HRC
PLA2G4C
FUT1
EMP3
FUZ
RUVBL2
SNORD34
NUP62
IL4I1
GYS1
SNAR-A6
MIR6798
SNAR-B1
SPHK2
SNAR-G1
KCNJ14
TSKS
MIR6799
MIR4324
SNORD33
FTL
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
PLA2G4C-AS1
ZNF114
LIG1
TMEM143
GRIN2D
CARD8-AS1
CARD8
CABP5
CCDC114
ELSPBP1
SYNGR4
KDELR1
PLA2G4C
C19orf68
EMP3
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
Back To TopMore Information
Set Membership: |
Intragenic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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