Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2040 | NP_067051.2 |
| XM_005259122.4 | 7 | 2323 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 1965 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 1767 | XP_016882572.1 | |
| AK024444.1 | 7 | 2040 | ||
| BC011662.2 | AAH11662.2 | |||
| BC053992.1 | 6 | 1927 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 PRRG2
BCL2L12
CPT1C
ADM5
PRR12
SCAF1
NOSIP
RRAS
MIR5088
PRMT1
IRF3
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
PRRG2
BCL2L12
CPT1C
ADM5
PRR12
SCAF1
NOSIP
RRAS
MIR5088
PRMT1
IRF3
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
CPT1C
GRWD1
CGB3
NTN5
RPL18
ZNF473
TSKS
SNAR-G1
RPS11
SNORD35B
EMP3
FTL
SIGLEC16
SNAR-A2
SNAR-A10
RPL13A
RCN3
SNORD34
SNAR-B1
SNAR-C3
KCNJ14
CA11
FCGRT
TEAD2
SNAR-A7
ELSPBP1
ADM5
ALDH16A1
CYTH2
MIR6799
KDELR1
LMTK3
TMEM143
FLJ26850
SNAR-A8
C19orf68
AP2A1
SNRNP70
SNAR-A6
FGF21
NUP62
LIN7B
MIR4751
SULT2B1
SNORD32A
HRC
SNAR-A9
SNAR-A12
PTOV1-AS1
IL4I1
PPP1R15A
SNAR-B2
NUCB1
NOSIP
PPFIA3
ATF5
AKT1S1
SNAR-C2
NTF4
SNAR-G2
BCL2L12
LOC100287477
GRIN2D
CGB1
PRR12
BSPH1
CGB5
MIR150
MIR4324
CARD8
CCDC114
PLA2G4C
KCNA7
MIR4749
LOC105447645
MIR6800
NUCB1-AS1
FUZ
GYS1
SNORD33
CD37
VRK3
TRPM4
DKKL1
LOC105372430
PTOV1
CARD8-AS1
CABP5
MIR4750
IRF3
CGB2
PTH2
FAM83E
MED25
FUT1
DHDH
TBC1D17
SCAF1
PIH1D1
SNORD35A
RASIP1
SPACA4
BAX
LIG1
LOC101928295
SEC1P
CGB7
MAMSTR
IZUMO1
SNAR-A4
PLEKHA4
SIGLEC11
SYNGR4
PLA2G4C-AS1
SNAR-A11
SNAR-A3
PRRG2
FLT3LG
TULP2
MIR6798
ZNF114
MIR5088
SLC6A16
SNAR-D
PRMT1
SNAR-A1
GFY
SNAR-A13
RUVBL2
CGB8
SNAR-A5
SLC17A7
LHB
SNAR-C1
C19orf73
PNKP
CCDC155
RRAS
LOC101059948
DBP
PTOV1-AS2
HSD17B14
SNAR-C5
SPHK2
SNAR-A14
FUT2
BCAT2
SNAR-C4
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
BCL2L12
CPT1C
ADM5
PTOV1
MIR6799
PRR12
RRAS
MIR5088
IRF3
TSKS
PTOV1-AS2
PTOV1-AS1
MED25
MIR4749
AP2A1
SCAF1
MIR6800
PRMT1
FUZ
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
PRRG2
BCL2L12
CPT1C
ADM5
PRR12
SCAF1
NOSIP
RRAS
MIR5088
PRMT1
IRF3
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
MIR4751
PRRG2
CPT1C
PTOV1
MIR4750
MIR5088
IRF3
TSKS
PTOV1-AS1
MED25
IL4I1
TBC1D17
SCAF1
NOSIP
PRMT1
ATF5
AKT1S1
BCL2L12
ADM5
PNKP
MIR6799
PRR12
RRAS
PTOV1-AS2
MIR4749
AP2A1
MIR6800
FUZ
NUP62
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
PRRG2
SNORD33
CPT1C
SNORD32A
MIR5088
IRF3
TSKS
RPS11
PTOV1-AS1
MED25
SNORD35B
RPL13A
RCN3
SNORD34
SCAF1
NOSIP
PRMT1
FCGRT
SNORD35A
BCL2L12
ADM5
MIR6799
PRR12
RRAS
MIR150
AP2A1
MIR6800
FUZ
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
PRRG2
BCL2L12
PRR12
SCAF1
NOSIP
RRAS
PRMT1
IRF3
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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