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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49650882 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01474903_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss ADM5 CPT1C IRF3 PRR12 PRMT1 PRRG2 NOSIP SCAF1 MIR5088 BCL2L12 RRAS
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss ADM5 CPT1C IRF3 PRR12 PRMT1 PRRG2 NOSIP SCAF1 MIR5088 BCL2L12 RRAS
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss SNAR-C3 FUT2 PTH2 DKKL1 DBP NOSIP SIGLEC16 CARD8 LOC105372430 LHB PPP1R15A BCL2L12 HRC BCAT2 KCNJ14 CCDC155 MIR4324 SNAR-G1 SNAR-A1 SPHK2 NTF4 ZNF114 SNAR-B1 PTOV1-AS1 PIH1D1 MIR6798 LOC101059948 SULT2B1 SNAR-A11 CCDC114 SNAR-A5 ZNF473 MIR4749 SYNGR4 NUCB1-AS1 SNAR-A6 EMP3 LIG1 SNORD32A ALDH16A1 BSPH1 TSKS SNAR-C2 C19orf73 SNAR-C1 FCGRT SEC1P LOC105447645 MIR6800 RPL18 SNORD33 CGB8 RRAS SNRNP70 CGB2 MIR4750 RUVBL2 SPACA4 FAM83E NUP62 CGB3 RPS11 SNAR-G2 MIR150 FUT1 CGB1 CARD8-AS1 CPT1C LMTK3 NUCB1 IZUMO1 TEAD2 SNAR-B2 FLJ26850 ADM5 IRF3 CGB7 SNAR-A12 SNAR-A3 BAX PTOV1-AS2 LOC100287477 CGB5 SNAR-C4 KDELR1 CYTH2 SIGLEC11 AKT1S1 SLC6A16 PLA2G4C-AS1 SNAR-A7 MIR5088 TULP2 AP2A1 GFY PRMT1 FGF21 SNAR-A4 IL4I1 SNAR-D RPL13A MIR6799 ELSPBP1 GRWD1 CD37 SNAR-A2 RASIP1 PRRG2 VRK3 PNKP PPFIA3 NTN5 PLA2G4C SNAR-C5 DHDH GRIN2D MAMSTR ATF5 SNORD34 PLEKHA4 SCAF1 SNAR-A13 HSD17B14 TMEM143 CABP5 FUZ SNAR-A14 SNAR-A9 LOC101928295 TBC1D17 KCNA7 SNORD35A PRR12 SLC17A7 SNORD35B MED25 GYS1 MIR4751 CA11 FLT3LG TRPM4 PTOV1 RCN3 FTL LIN7B C19orf68 SNAR-A10 SNAR-A8
nsv470150 Chr.19:49618821 - 49856789 on Build GRCh38 Gain ADM5 TSKS IRF3 PRMT1 SCAF1 PTOV1-AS1 PTOV1-AS2 MIR6799 MIR6800 BCL2L12 RRAS FUZ CPT1C PTOV1 PRR12 MIR4749 MED25 MIR5088 AP2A1
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain ADM5 CPT1C IRF3 PRR12 PRMT1 PRRG2 NOSIP SCAF1 MIR5088 BCL2L12 RRAS
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion ADM5 TSKS ATF5 IRF3 NOSIP SCAF1 PTOV1-AS2 MIR6800 BCL2L12 RRAS FUZ MIR4750 TBC1D17 PRR12 AKT1S1 MED25 MIR5088 AP2A1 NUP62 MIR4751 PRMT1 IL4I1 PTOV1-AS1 MIR6799 CPT1C PTOV1 MIR4749 PRRG2 PNKP
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss IRF3 SCAF1
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion ADM5 TSKS IRF3 NOSIP FCGRT SNORD34 SCAF1 MIR6800 SNORD33 BCL2L12 RRAS FUZ SNORD35A PRR12 SNORD35B MED25 MIR5088 AP2A1 PRMT1 RPS11 PTOV1-AS1 MIR150 RPL13A MIR6799 CPT1C PRRG2 RCN3 SNORD32A
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss IRF3 PRR12 PRMT1 PRRG2 NOSIP SCAF1 BCL2L12 RRAS
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss IRF3 SCAF1

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