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See other SCAF1 CNV Assays ›
Gene Symbol
SCAF1
Assay Reference Genome
Location

Chr.19:49650882 on build GRCh38
Cytoband
19q13.33
Assay ID Hs01474903_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 58506

Gene Name:

 SR-related CTD associated factor 1

Gene Aliases:

 SRA1

Location:

 Chr.19:49640483-49658649 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 8 - Exon 9
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SCAF1 NM_021228.2 NP_067051.2
XM_005259122.4 XP_005259179.1
XM_011527194.2 XP_011525496.1
XM_017027083.1 XP_016882572.1
AK024444.1
BC011662.2 AAH11662.2
BC053992.1 AAH53992.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv469715 Chr.19:49572544 - 49730286 on Build GRCh38 Gain+Loss SCAF1 ADM5 RRAS NOSIP PRRG2 IRF3 PRMT1 MIR5088 CPT1C BCL2L12 PRR12
nsv833865 Chr.19:49572545 - 49730286 on Build GRCh38 Gain+Loss SCAF1 ADM5 RRAS NOSIP PRRG2 IRF3 PRMT1 MIR5088 CPT1C BCL2L12 PRR12
nsv9739 Chr.19:47901840 - 50143063 on Build GRCh38 Gain+Loss NUCB1-AS1 SNAR-A5 CGB8 FUT2 MIR4751 VRK3 RASIP1 LOC105447645 SNAR-B1 PTOV1 CD37 TRPM4 PLA2G4C-AS1 ELSPBP1 SNAR-A13 MAMSTR NTF4 CA11 SNAR-C1 CGB1 MIR6799 TEAD2 TSKS MIR6798 NUCB1 PRRG2 SNAR-A10 MIR150 RPL13A IRF3 HRC CPT1C SLC6A16 SNAR-G1 TBC1D17 AP2A1 SNAR-C3 AKT1S1 LIN7B FGF21 PLA2G4C RCN3 SNAR-A7 SNAR-A8 NTN5 CGB7 SNAR-A4 SNAR-A2 PTOV1-AS2 CGB5 LIG1 CCDC114 SNAR-D PPP1R15A ATF5 FCGRT PTH2 DHDH LOC101928295 C19orf68 SIGLEC11 CARD8 C19orf73 LOC105372430 ZNF473 KCNJ14 MIR4750 SEC1P SNORD35B FLT3LG CABP5 SIGLEC16 SNAR-G2 RUVBL2 CYTH2 SYNGR4 LHB CCDC155 SNAR-C4 GYS1 LOC101059948 SNAR-B2 CGB2 SNORD35A HSD17B14 TULP2 CARD8-AS1 PTOV1-AS1 FAM83E GFY IZUMO1 SNAR-A14 SNAR-A6 ALDH16A1 MED25 EMP3 GRIN2D SNORD33 FLJ26850 NOSIP SNRNP70 RPS11 SNAR-C5 BCL2L12 SLC17A7 SNAR-A9 ZNF114 DKKL1 CGB3 PRR12 LOC100287477 LMTK3 SNORD32A BAX SNAR-C2 SNAR-A11 MIR5088 DBP PNKP PPFIA3 SNAR-A1 KCNA7 SNAR-A3 MIR4749 SNAR-A12 PIH1D1 SNORD34 TMEM143 RPL18 MIR4324 SPACA4 PLEKHA4 KDELR1 IL4I1 MIR6800 FUZ BCAT2 PRMT1 SCAF1 NUP62 FUT1 SPHK2 ADM5 BSPH1 RRAS GRWD1 SULT2B1 FTL
nsv817854 Chr.19:49618821 - 49726387 on Build GRCh38 Gain SCAF1 ADM5 RRAS IRF3 PRMT1 MIR5088 CPT1C BCL2L12 PRR12
nsv579909 Chr.19:49649784 - 49659652 on Build GRCh38 Loss SCAF1 IRF3
nsv953600 Chr.19:49555044 - 49938043 on Build GRCh38 Deletion PTOV1-AS2 PNKP ATF5 MIR4751 PTOV1-AS1 PTOV1 MIR4749 MED25 MIR4750 NOSIP BCL2L12 MIR6799 IL4I1 MIR6800 FUZ TSKS PRRG2 IRF3 PRMT1 CPT1C PRR12 SCAF1 TBC1D17 NUP62 AP2A1 AKT1S1 ADM5 RRAS MIR5088
nsv833864 Chr.19:49551790 - 49733819 on Build GRCh38 Gain SCAF1 ADM5 RRAS NOSIP PRRG2 IRF3 PRMT1 MIR5088 CPT1C BCL2L12 PRR12
nsv1160655 Chr.19:49489110 - 49841830 on Build GRCh38 Deletion SNORD35A FCGRT PTOV1-AS1 MED25 SNORD34 SNORD33 SNORD35B NOSIP RPS11 BCL2L12 MIR6799 MIR6800 FUZ TSKS PRRG2 MIR150 RPL13A IRF3 PRMT1 CPT1C PRR12 SCAF1 AP2A1 ADM5 SNORD32A RRAS RCN3 MIR5088
nsv828578 Chr.19:49560777 - 49680548 on Build GRCh38 Loss SCAF1 RRAS NOSIP PRRG2 IRF3 PRMT1 BCL2L12 PRR12
nsv579908 Chr.19:49645135 - 49663393 on Build GRCh38 Loss SCAF1 IRF3

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