Hs01497698_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89873660 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2	1	75	NP_055787.1
	XM_005256297.2	1	69	XP_005256354.1
	XM_005256298.2	1	69	XP_005256355.1
	XM_005256299.2	1	69	XP_005256356.1
	XM_011522956.2	1	69	XP_011521258.1
	XM_011522957.2	1	69	XP_011521259.1
	XM_011522958.2	1	69	XP_011521260.1
	XM_011522959.2	1	69	XP_011521261.1
	XM_011522960.2	1	69	XP_011521262.1
	XM_011522961.2	1	71	XP_011521263.1
	XM_017023047.1	1	69	XP_016878536.1
	XM_017023048.1	1	69	XP_016878537.1
	XM_017023049.1	1	69	XP_016878538.1
	XM_017023050.1	1	69	XP_016878539.1
	XM_017023051.1	1	69	XP_016878540.1
	XM_017023052.1	1	69	XP_016878541.1
	XM_017023054.1	1	71	XP_016878543.1
	XM_017023055.1	1	71	XP_016878544.1
	XM_017023056.1	1	78	XP_016878545.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1	1	69
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2	1	49	AAH11884.1
	BI913551.1	1	75
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	LOC105371419 TCF25 ZNF276 FANCA LOC107984817 SPIRE2
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC105371419 TCF25 FANCA LOC107984817 SPIRE2
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	SPATA33 AFG3L1P CENPBD1 DEF8 DPEP1 LOC107984817 VPS9D1 TUBB3 DBNDD1 MC1R GAS8 VPS9D1-AS1 GAS8-AS1 LOC105371419 SPATA2L TCF25 ZNF276 CDK10 FANCA SPIRE2 CHMP1A
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	DBNDD1 MC1R GAS8 AFG3L1P CENPBD1 GAS8-AS1 DEF8 TCF25 SPIRE2 TUBB3
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	PRDM7 SPATA33 CENPBD1 FAM157C TUBB8P7 SPG7 LOC105371414 DBNDD1 GAS8 SPATA2L TCF25 ZNF778 ANKRD11 ZNF276 CDK10 AFG3L1P SNORD68 LOC100287036 DEF8 DPEP1 URAHP LOC107984817 VPS9D1 TUBB3 MC1R VPS9D1-AS1 GAS8-AS1 LOC101927817 CPNE7 LOC105371419 RPL13 FANCA SPIRE2 CHMP1A
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	DBNDD1 MC1R GAS8 AFG3L1P CENPBD1 DEF8 LOC105371419 TCF25 SPIRE2 TUBB3
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC107987238 PRDM7 SPATA33 FAM157C SNAI3-AS1 GAS8 SLC22A31 ZNF778 ZNF276 LOC101927793 CYBA AFG3L1P GALNS SNORD68 LOC100287036 DEF8 RNF166 LOC400558 LOC107984817 PABPN1L IL17C MVD VPS9D1-AS1 GAS8-AS1 LOC101927817 CPNE7 FANCA SPIRE2 CHMP1A CENPBD1 ACSF3 LOC100129697 TUBB8P7 SPG7 CDT1 LOC105371414 LOC100289580 DBNDD1 SNAI3 LINC00304 TRAPPC2L SPATA2L TCF25 ANKRD11 CDK10 APRT CDH15 MIR4722 CBFA2T3 DPEP1 URAHP PIEZO1 VPS9D1 TUBB3 MC1R LOC339059 LOC105371419 LOC105371409 CTU2 RPL13

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding