Hs01497698_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89873660 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Exon 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2	1	75	NP_055787.1
	XM_005256297.2	1	69	XP_005256354.1
	XM_005256298.2	1	69	XP_005256355.1
	XM_005256299.2	1	69	XP_005256356.1
	XM_011522956.2	1	69	XP_011521258.1
	XM_011522957.2	1	69	XP_011521259.1
	XM_011522958.2	1	69	XP_011521260.1
	XM_011522959.2	1	69	XP_011521261.1
	XM_011522960.2	1	69	XP_011521262.1
	XM_011522961.2	1	71	XP_011521263.1
	XM_017023047.1	1	69	XP_016878536.1
	XM_017023048.1	1	69	XP_016878537.1
	XM_017023049.1	1	69	XP_016878538.1
	XM_017023050.1	1	69	XP_016878539.1
	XM_017023051.1	1	69	XP_016878540.1
	XM_017023052.1	1	69	XP_016878541.1
	XM_017023054.1	1	71	XP_016878543.1
	XM_017023055.1	1	71	XP_016878544.1
	XM_017023056.1	1	78	XP_016878545.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1	1	69
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2	1	49	AAH11884.1
	BI913551.1	1	75
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv457624	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	FANCA TCF25 LOC105371419 ZNF276 LOC107984817 SPIRE2
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	GAS8 TCF25 CDK10 LOC107984817 TUBB3 SPIRE2 FANCA CENPBD1 LOC105371419 AFG3L1P GAS8-AS1 DPEP1 DBNDD1 MC1R ZNF276 SPATA33 CHMP1A VPS9D1 SPATA2L DEF8 VPS9D1-AS1
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	FANCA TCF25 LOC105371419 LOC107984817 SPIRE2
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	GAS8 TCF25 CENPBD1 AFG3L1P GAS8-AS1 DBNDD1 MC1R TUBB3 DEF8 SPIRE2
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	TUBB8P7 TCF25 ZNF778 LOC107984817 LOC105371414 TUBB3 FANCA LOC100287036 CPNE7 ANKRD11 AFG3L1P DPEP1 MC1R ZNF276 CHMP1A RPL13 VPS9D1 VPS9D1-AS1 GAS8 URAHP CDK10 FAM157C SNORD68 SPIRE2 SPG7 CENPBD1 LOC105371419 GAS8-AS1 DBNDD1 PRDM7 SPATA33 SPATA2L DEF8 LOC101927817
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	GAS8 TCF25 CENPBD1 LOC105371419 AFG3L1P DBNDD1 MC1R TUBB3 DEF8 SPIRE2
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	MVD LOC107984817 PIEZO1 CPNE7 ANKRD11 DPEP1 LOC100289580 ZNF276 SNAI3 GALNS VPS9D1-AS1 GAS8 IL17C FAM157C LOC107987238 SNORD68 LOC101927793 SPIRE2 RNF166 LOC105371419 GAS8-AS1 PRDM7 LOC100129697 SPATA2L ACSF3 TUBB8P7 TCF25 LINC00304 SNAI3-AS1 ZNF778 TRAPPC2L LOC105371414 TUBB3 LOC400558 APRT FANCA LOC100287036 MIR4722 AFG3L1P MC1R CTU2 PABPN1L CBFA2T3 CHMP1A RPL13 VPS9D1 CYBA URAHP CDH15 LOC339059 CDK10 SLC22A31 SPG7 CDT1 CENPBD1 DBNDD1 SPATA33 LOC105371409 DEF8 LOC101927817

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding