Genomic Map
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Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SCAF1 | NM_021228.2 | 7 | 2881 | NP_067051.2 |
| XM_005259122.4 | 7 | 3164 | XP_005259179.1 | |
| XM_011527194.2 | 7 | 2806 | XP_011525496.1 | |
| XM_017027083.1 | 4 | 2608 | XP_016882572.1 | |
| AK024444.1 | 7 | 2881 | ||
| BC011662.2 | AAH11662.2 | |||
| BC018398.1 | 1 | 272 | AAH18398.1 | |
| BC053992.1 | 6 | 2768 | AAH53992.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss |
 NOSIP
PRMT1
PRRG2
CPT1C
RRAS
SCAF1
ADM5
IRF3
BCL2L12
PRR12
MIR5088
|
| nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss |
NOSIP
PRMT1
PRRG2
CPT1C
RRAS
SCAF1
ADM5
IRF3
BCL2L12
PRR12
MIR5088
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
FCGRT
CGB3
SNAR-A5
LOC100287477
LOC105447645
MIR150
ELSPBP1
SNAR-A12
IRF3
GRWD1
FTL
CGB2
SNAR-A13
SNAR-A7
SNORD33
CARD8
SNAR-G2
BAX
RPL13A
PIH1D1
TMEM143
SULT2B1
CABP5
NUCB1-AS1
AKT1S1
CARD8-AS1
GFY
SLC17A7
NTF4
MIR4751
CPT1C
SNAR-A3
SLC6A16
SCAF1
SNAR-C3
CCDC114
SPACA4
CYTH2
SNAR-A11
PRMT1
DHDH
CCDC155
VRK3
KCNJ14
TRPM4
PLA2G4C-AS1
NUCB1
RUVBL2
TULP2
CGB1
LIG1
CGB5
LIN7B
SNAR-C4
FGF21
SIGLEC16
ALDH16A1
MAMSTR
SNORD34
SNAR-B1
PTOV1-AS2
FAM83E
RASIP1
MIR4749
IZUMO1
FUT2
TSKS
NUP62
RPS11
LOC101928295
SNAR-A14
PLA2G4C
ZNF473
SNAR-B2
SNORD32A
PRR12
SNAR-A4
FUT1
BCAT2
LHB
AP2A1
RPL18
SYNGR4
SPHK2
PPP1R15A
MIR6798
CGB7
MIR4750
FLT3LG
NOSIP
SNAR-A10
RCN3
TBC1D17
ATF5
EMP3
MIR6800
CD37
PPFIA3
DBP
SNORD35B
SNAR-G1
RRAS
NTN5
ADM5
FLJ26850
GYS1
SIGLEC11
SNAR-A9
DKKL1
SNAR-A8
SNAR-C2
LOC105372430
PTOV1
SNAR-A6
SNAR-C5
SNAR-C1
C19orf73
SNAR-D
MED25
BSPH1
BCL2L12
CA11
HRC
LMTK3
MIR4324
GRIN2D
SNORD35A
SEC1P
PRRG2
KDELR1
C19orf68
SNAR-A1
HSD17B14
FUZ
PTH2
SNAR-A2
CGB8
MIR6799
PNKP
PLEKHA4
MIR5088
IL4I1
PTOV1-AS1
LOC101059948
TEAD2
KCNA7
SNRNP70
ZNF114
|
| nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain |
PRMT1
RRAS
MIR4749
AP2A1
MED25
FUZ
ADM5
IRF3
MIR6799
BCL2L12
TSKS
MIR5088
PTOV1-AS1
CPT1C
SCAF1
MIR6800
PRR12
PTOV1-AS2
PTOV1
|
| nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain |
NOSIP
PRMT1
PRRG2
CPT1C
RRAS
SCAF1
ADM5
IRF3
BCL2L12
PRR12
MIR5088
|
| nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion |
PRMT1
AP2A1
MED25
IRF3
BCL2L12
MIR4750
NOSIP
TBC1D17
ATF5
MIR6800
PTOV1-AS2
PRRG2
RRAS
MIR4749
AKT1S1
FUZ
ADM5
MIR6799
PNKP
TSKS
NUP62
MIR5088
IL4I1
PTOV1-AS1
MIR4751
CPT1C
SCAF1
PRR12
PTOV1
|
| nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss |
SCAF1
IRF3
|
| nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion |
PRMT1
FCGRT
AP2A1
MIR150
MED25
IRF3
BCL2L12
NOSIP
SNORD33
RCN3
RPL13A
MIR6800
SNORD34
SNORD35A
SNORD35B
PRRG2
RRAS
FUZ
ADM5
MIR6799
TSKS
RPS11
MIR5088
PTOV1-AS1
CPT1C
SCAF1
SNORD32A
PRR12
|
| nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss |
NOSIP
PRMT1
PRRG2
RRAS
SCAF1
IRF3
BCL2L12
PRR12
|
| nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss |
SCAF1
IRF3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Molecular Function -
RNA metabolism protein
RNA processing factor
RNA splicing factor
nucleic acid metabolism protein
Gene Ontology Categories:
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