Hs01658398_cn

• Gene Symbol: CTDP1
• Assay Reference Genome Location: Chr.18:79713029 on build GRCh38
• Cytoband: 18q23

Target Gene Details

• Entrez Gene ID: 9150
• Gene Name: CTD phosphatase subunit 1
• Gene Aliases: CCFDN, FCP1
• Location: Chr.18:79679801-79754510 on Build GRCh38
• Assay Gene Location: Within Exon 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CTDP1	NM_001202504.1	7	695	NP_001189433.1
	NM_001318511.1	7	1068	NP_001305440.1
	NM_004715.4	7	1068	NP_004706.3
	NM_048368.3	7	1068	NP_430255.2
	XM_011526261.1	7	1046	XP_011524563.1
	XM_017026078.1	5	548	XP_016881567.1
	AF081287.1	6	616	AAC64549.1
	AF154115.1	7	1004	AAD42088.1
	BC015010.1			AAH15010.1
	BC052576.1	7	660	AAH52576.1
	BC063447.1	7	1023	AAH63447.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv509709	Chr.18:79685368 - 79838375 on Build GRCh38	Insertion	LOC105376875 CTDP1 KCNG2
nsv428359	Chr.18:79277548 - 80255221 on Build GRCh38	Gain	RBFADN LOC105376875 PARD6G-AS1 PQLC1 LOC107985149 LOC284240 ATP9B LOC284241 PARD6G ADNP2 RBFA NFATC1 TXNL4A CTDP1 KCNG2 HSBP1L1
nsv525694	Chr.18:79395184 - 79961125 on Build GRCh38	Loss	LOC284240 LOC105376875 LOC284241 PQLC1 NFATC1 CTDP1 KCNG2
nsv470437	Chr.18:79657934 - 80103778 on Build GRCh38	Loss	RBFADN LOC105376875 LOC284241 PQLC1 RBFA TXNL4A CTDP1 KCNG2 HSBP1L1
nsv519406	Chr.18:79630343 - 79897319 on Build GRCh38	Gain	LOC105376875 LOC284241 CTDP1 KCNG2
nsv1065902	Chr.18:78538045 - 80257174 on Build GRCh38	Gain	RBFADN LOC105376875 PARD6G-AS1 PQLC1 LOC107985149 LOC100996274 LOC284240 ATP9B LOC284241 PARD6G ADNP2 RBFA SALL3 NFATC1 TXNL4A CTDP1 KCNG2 HSBP1L1
nsv1064506	Chr.18:79580427 - 79773771 on Build GRCh38	Gain	LOC284240 LOC105376875 LOC284241 CTDP1
nsv1061450	Chr.18:79703531 - 80135801 on Build GRCh38	Gain	RBFADN PQLC1 ADNP2 RBFA TXNL4A CTDP1 KCNG2 HSBP1L1
nsv1066888	Chr.18:79643023 - 79769924 on Build GRCh38	Gain	LOC105376875 LOC284241 CTDP1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
transcription elongation from RNA polymerase II promoter
protein dephosphorylation
exit from mitosis
positive regulation of viral transcription
cell division
negative regulation of cell growth involved in cardiac muscle cell development
dephosphorylation of RNA polymerase II C-terminal domain

Function(s)

phosphoprotein phosphatase activity
protein binding
CTD phosphatase activity