Hs01725836_cn

• Gene Symbol: FAM3A
• Assay Reference Genome Location: Chr.X:154508513 on build GRCh38
• Cytoband: Xq28

Target Gene Details

• Entrez Gene ID: 60343
• Gene Name: family with sequence similarity 3 member A
• Gene Aliases: 2.19, DLD, DXS560S, XAP-7
• Location: Chr.X:154506159-154516249 on Build GRCh38
• Assay Gene Location: Within Exon 5

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAM3A	NM_001171132.2	5	609	NP_001164603.1
	NM_001171133.2	4	495	NP_001164604.1
	NM_001171134.2	4	706	NP_001164605.1
	NM_001282311.1	5	804	NP_001269240.1
	NM_001282312.1	5	550	NP_001269241.1
	NM_021806.3	4	706	NP_068578.2
	XM_005274714.3	6	654	XP_005274771.1
	XM_005274716.3	6	654	XP_005274773.1
	XM_005277879.4	5	615	XP_005277936.1
	XM_006724831.2	6	654	XP_006724894.1
	XM_006724832.3	5	615	XP_006724895.1
	XM_006724833.2	6	654	XP_006724896.1
	XM_006724834.2	5	767	XP_006724897.1
	XM_011531185.2	3	212	XP_011529487.1
	XM_017029699.1	4	927	XP_016885188.1
	XM_017029700.1	4	926	XP_016885189.1
	XM_017029701.1	5	829	XP_016885190.1
	XM_017029702.1	4	442	XP_016885191.1
	AK024601.1	5	566
	AK057945.1	5	424
	AK124890.1	1	2900
	AK294116.1	4	669
	AK314682.1	4	624
	AL539139.3	5	801
	BC002934.1	5	708	AAH02934.1
	BC008912.2	4	357	AAH08912.1
	BM457676.1	5	591
	CX867071.1	4	413
	X87193.1	4	513	CAA60645.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv33784	Chr.X:153962665 - 155699588 on Build GRCh38	Gain+Loss	SNORA70 FUNDC2 GAB3 TAZ MIR1184-1 RAB39B H2AFB1 OPN1MW3 FAM223A MIR1184-2 MIR3202-2 MIR1184-3 LOC105373386 CH17-340M24.3 GDI1 OPN1MW UBL4A H2AFB2 LOC107987332 MTCP1 CTAG1B BRCC3 FAM3A MIR6858 MPP1 MIR664B H2AFB3 CTAG1A CMC4 IKBKG F8A2 IRAK1 EMD OPN1LW TKTL1 PLXNA3 FLNA SNORA56 LAGE3 MIR3202-1 SPRY3 SNORA36A VBP1 TMEM187 OPN1MW2 FAM50A CLIC2 MIR718 ATP6AP1 F8A1 SMIM9 TMLHE-AS1 TMLHE LOC101927830 TEX28 DKC1 HCFC1 MECP2 G6PD RPL10 DNASE1L1 CTAG2 F8 FAM223B F8A3 SLC10A3 HCFC1-AS1
nsv519042	Chr.X:154082978 - 154601444 on Build GRCh38	Gain	SNORA70 EMD OPN1LW TKTL1 PLXNA3 TAZ FLNA LAGE3 OPN1MW3 FAM223A OPN1MW2 LOC105373386 FAM50A CH17-340M24.3 GDI1 ATP6AP1 OPN1MW UBL4A LOC107987332 TEX28 FAM3A MECP2 MIR6858 G6PD RPL10 DNASE1L1 SLC10A3 CTAG1A IKBKG
esv33199	Chr.X:153065734 - 154591978 on Build GRCh38	Gain+Loss	SNORA70 SRPK3 TREX2 TAZ OPN1MW3 FAM223A MIR3202-2 SLC6A8 LOC105373386 IDH3G LOC105373377 CH17-340M24.3 GDI1 OPN1MW UBL4A LOC107987332 LOC105373383 ABCD1 ATP2B3 RENBP PNCK FAM3A PNMA6A MIR6858 DUSP9 CTAG1A IKBKG FAM58A AVPR2 IRAK1 EMD OPN1LW TKTL1 PLXNA3 FLNA NAA10 BCAP31 MAGEA1 HAUS7 LOC107983954 LAGE3 MIR3202-1 LCA10 TMEM187 OPN1MW2 LOC105373381 FAM50A MIR718 ATP6AP1 PDZD4 ZNF275 L1CAM TEX28 HCFC1 BGN MECP2 G6PD RPL10 DNASE1L1 LOC105373378 SSR4 SLC10A3 ARHGAP4 HCFC1-AS1 PLXNB3 ZFP92
nsv508816	Chr.X:154492171 - 154591783 on Build GRCh38	Insertion	FAM223A G6PD CTAG1A FAM3A IKBKG

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

antimicrobial response protein

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function